[Home] | [Total List]

[179473_at]

Description C45G3.4 /REP_DB=WormBase Gene ID /WP=CE17547 /TR=O62098 /GB=CAB07177.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 19      6grp_total > 21      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 94.5
(3)
P 		61
(-3)
P 		64.4
(-2.4)
A 		91.5
(2.5)
P 		34
B 80.2
(2.9)
P 		60.9
(-0)
P 		41.3
(-3)
A 		81.1
(3)
P 		40
C 84.1
(0.9)
P 		77.4
(0.2)
P 		46.4
(-3)
P 		104.2
(3)
P 		58
avr 86.3
(2.1) 		66.4
(-0.7) 		50.7
(-3) 		92.3
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 20.2
(-3)
A 		47.4
(1.5)
M 		56.7
(3)
P 		40.9
(0.4)
M 		26.9
(-1.9)
A 		26.5
(-2)
A 		37
B 59.4
(0.3)
P 		77.1
(3)
P 		69.5
(1.8)
A 		43.1
(-2.2)
A 		49
(-1.3)
P 		38.1
(-3)
P 		39
C 83.5
(3)
P 		68.5
(0.4)
P 		62.9
(-0.6)
A 		68.1
(0.3)
A 		49.4
(-3)
P 		55.7
(-1.9)
P 		34
avr 54.4
(0.5) 		64.3
(3) 		63
(2.7) 		50.7
(-0.4) 		41.8
(-2.6) 		40.1
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 34.4
(3)
P 		13.2
(-3)
P 		16.8
(-2)
A 		13.4
(-2.9)
P 		21
B 25.6
(3)
P 		15
(-1)
P 		9.6
(-3)
A 		17.3
(-0.1)
P 		16
C 27.8
(3)
P 		22.2
(0.1)
P 		16.2
(-3)
P 		17.6
(-2.3)
P 		12
avr 29.3
(3) 		16.8
(-2) 		14.2
(-3) 		16.1
(-2.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3.7
(-3)
A 		16.9
(3)
M 		12.4
(1)
P 		10.4
(0)
M 		8.1
(-1)
A 		6.4
(-1.8)
A 		13
B 20.7
(0.9)
P 		25.6
(3)
P 		16.9
(-0.7)
A 		11.4
(-3)
A 		19.9
(0.6)
P 		14.2
(-1.8)
P 		14
C 30.9
(3)
P 		20.9
(-0.5)
P 		16
(-2.2)
A 		13.7
(-3)
A 		16
(-2.2)
P 		18.7
(-1.3)
P 		17
avr 18.4
(1.3) 		21.1
(3) 		15.1
(-0.9) 		11.8
(-3) 		14.7
(-1.1) 		13.1
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179473_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1450
Sequence Type Exemplar sequence
Representative Public ID C45G3.4 NCBI
Target Description C45G3.4 /REP_DB=WormBase Gene ID /WP=CE17547 /TR=O62098 /GB=CAB07177.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001030058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001030058 NCBI Caenorhabditis elegans C45G3.4 (C45G3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000024116 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9218684:9228250:-1 11/11 None
SNAP00000024099 ENSEMBL cdna:SNAP chromosome:CEL140:I:9226480:9227153:-1 11/11 None
C45G3.4 ENSEMBL cdna:known chromosome:CEL140:I:9226480:9227153:-1 gene:C45G3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9226410-9227084(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G3.4
Entrez Gene 3565963 Entrez gene
SwissProt O62098 EMBL-EBI
WormBase CE17547 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07177 Hypothetical protein C45G3.4 [Caenorhabditis elegans] ref|NP_001025229.1| C45G3.4 [Caenorhabditis elegans] 3.0E-50
blast CAB07177 Hypothetical protein C45G3.4 [Caenorhabditis elegans] ref|NP_001025229.1| C45G3.4 [Caenorhabditis elegans] 3.0E-47
blast CAB07177 Hypothetical protein C45G3.4 [Caenorhabditis elegans] ref|NP_001025229.1| C45G3.4 [Caenorhabditis elegans] 1.0E-38
blast CAE70386 Hypothetical protein CBG16950 [Caenorhabditis briggsae] 4.0E-12
blast CAE70386 Hypothetical protein CBG16950 [Caenorhabditis briggsae] 1.0E-10
blast CAE70386 Hypothetical protein CBG16950 [Caenorhabditis briggsae] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:179473_AT
atgccatctgctcatggagctcttcacaaattattgtgctcgtgttattcaaaaaacacc
gaagtggttgatatctatgatatgccggaaaataataatgcgcaggaaaaagaagatcat
tacacaaaaagagcaatagatatcggagaaacaaaaaaaagattggaacttcttccacca
cctccaacatcttcatcgccccggccaacatcttctaattcaattattcaaaaaagtgat
ggaaaacgaaaagatcagaagaatgagaaacaagcatctccgatcatcgtggaagtttac
gatgacacacctcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCATCTGCTCATGGAGCTCTTC 514 41 13 Antisense
GCTCATGGAGCTCTTCACAAATTAT 191 301 22 Antisense
ACAAATTATTGTGCTCGTGTTATTC 386 111 38 Antisense
ATTGTGCTCGTGTTATTCAAAAAAC 399 3 45 Antisense
CACCGAAGTGGTTGATATCTATGAT 122 201 69 Antisense
ATATCTATGATATGCCGGAAAATAA 15 15 83 Antisense
CGGCCAACATCTTCTAATTCAATTA 47 243 214 Antisense
AGAAACAAGCATCTCCGATCATCGT 261 73 278 Antisense
AAGCATCTCCGATCATCGTGGAAGT 478 151 284 Antisense
TCTCCGATCATCGTGGAAGTTTACG 71 609 289 Antisense
AGTTTACGATGACACACCTCAATCA 116 63 306 Antisense
Sequence Source Affymetrix Proprietary Database