[Home] | [Total List]

[179472_at]

Description F27C8.2 /REP_DB=WormBase Gene ID /WP=CE03267 /TR=Q19835 /GB=CAA92460.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 26      6grp_total > 14      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 101.5
(3)
P 		80.7
(-0.7)
P 		67.8
(-3)
A 		99.3
(2.6)
P 		34
B 140.8
(3)
P 		61.2
(-1.8)
A 		46.1
(-2.7)
M 		41.2
(-3)
A 		100
C 86.6
(3)
P 		59.7
(-0.9)
P 		44.8
(-3)
P 		45.5
(-2.9)
P 		42
avr 109.6
(3) 		67.2
(-1.5) 		52.9
(-3) 		62
(-2) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 110.2
(2.6)
P 		77.9
(0.3)
P 		98.8
(1.8)
P 		116.3
(3)
P 		30.3
(-3)
A 		63.4
(-0.7)
A 		86
B 104.4
(1.7)
P 		119.5
(3)
P 		94.1
(0.9)
P 		73.2
(-0.9)
M 		76.8
(-0.6)
P 		48
(-3)
M 		72
C 180
(3)
P 		145.7
(1.5)
P 		91.1
(-0.9)
P 		75.1
(-1.7)
P 		44.9
(-3)
P 		46.3
(-2.9)
P 		135
avr 131.5
(3) 		114.4
(1.7) 		94.7
(0.3) 		88.2
(-0.2) 		50.7
(-3) 		52.6
(-2.9) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 37
(3)
P 		17.5
(-2.2)
P 		17.7
(-2.1)
A 		14.5
(-3)
P 		23
B 44.9
(3)
P 		15.1
(-2)
A 		10.7
(-2.7)
M 		8.8
(-3)
A 		36
C 28.7
(3)
P 		17.2
(-0.3)
P 		15.6
(-0.7)
P 		7.7
(-3)
P 		21
avr 36.9
(3) 		16.6
(-1.6) 		14.7
(-2) 		10.3
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 20.3
(0.3)
P 		27.7
(2.5)
P 		21.5
(0.6)
P 		29.5
(3)
P 		9.1
(-3)
A 		15.4
(-1.1)
A 		20
B 36.3
(2)
P 		39.8
(3)
P 		22.9
(-1.6)
P 		19.4
(-2.6)
M 		31.2
(0.6)
P 		17.9
(-3)
M 		22
C 66.7
(3)
P 		44.5
(0.4)
P 		23.2
(-2)
P 		15.1
(-2.9)
P 		14.5
(-3)
P 		15.5
(-2.9)
P 		52
avr 41.1
(3) 		37.3
(2.1) 		22.5
(-1.5) 		21.3
(-1.8) 		18.3
(-2.5) 		16.3
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8366
Sequence Type Exemplar sequence
Representative Public ID F27C8.2 NCBI
Target Description F27C8.2 /REP_DB=WormBase Gene ID /WP=CE03267 /TR=Q19835 /GB=CAA92460.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069305(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069305 NCBI Caenorhabditis elegans F27C8.2 (F27C8.2) mRNA, complete cds. 10/11 None
SNAP00000022611 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9597125:9598656:1 9/11 None
GENEFINDER00000022617 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9597206:9598656:1 10/11 None
F27C8.2 ENSEMBL cdna:known chromosome:CEL140:IV:9597116:9598656:1 gene:F27C8.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9597130-9598662(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27C8.2
Entrez Gene 185013 Entrez gene
SwissProt Q19835 EMBL-EBI
WormBase CE32882 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92460 Hypothetical protein F27C8.2 [Caenorhabditis elegans] ref|NP_501706.2| F27C8.2 [Caenorhabditis elegans] 0.0
blast CAE72787 Hypothetical protein CBG20049 [Caenorhabditis briggsae] 1.0E-125
blast CAE72787 Hypothetical protein CBG20049 [Caenorhabditis briggsae] 1.0E-111
blast CAE72787 Hypothetical protein CBG20049 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:179472_AT
tatcgattctctactattggtccaatatttgtacaagaagactttcgtcatattggaatt
ggatcaatcctgatggaagaaatactcaaaaacacagataatattgttttcaacgcgagt
aagtcattctacataatacactctgaaaacaacactgaagatcaatgggaaaggatcaga
gaatttggagaagaatgtacaaatgaaagaagaaattggaaagcattctccgaaaaaagc
gatgaaaattgtcaaattgtcgccgcatttgatgagaacacaggaagctgcgtcggaatt
tcaattcttcgtgaaattcaaaatgaagatggccacatccctgacttattaattgctcca
cttcacgcaaagtctacagcaattgctgaaatattactacaaaaatcattgaaaaagcat
tataatcccgaagacgactatgactttgatgtggaccatcttgcaatttatcgtcgttct
gttaacttttttatcttttcaaattgtgaatcattaatgtttccgttactgaaaaaatta
actggaaatgatggaagcatgttaccggcaatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGATTCTCTACTATTGGTCCAA 70 659 379 Antisense
GTTTTCAACGCGAGTAAGTCATTCT 301 447 484 Antisense
TTGTCGCCGCATTTGATGAGAACAC 416 705 635 Antisense
ACACAGGAAGCTGCGTCGGAATTTC 275 111 656 Antisense
AATGAAGATGGCCACATCCCTGACT 365 163 700 Antisense
ATCCCTGACTTATTAATTGCTCCAC 679 37 715 Antisense
TGCTCCACTTCACGCAAAGTCTACA 137 583 732 Antisense
AAGCATTATAATCCCGAAGACGACT 432 137 793 Antisense
GACGACTATGACTTTGATGTGGACC 697 377 811 Antisense
ACCATCTTGCAATTTATCGTCGTTC 403 87 833 Antisense
GATGGAAGCATGTTACCGGCAATTA 437 407 928 Antisense
Sequence Source Affymetrix Proprietary Database