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[179471_at]

Description F40D4.5 /REP_DB=WormBase Gene ID /WP=CE19839 /TR=Q9XV30 /GB=CAB04364.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 26      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 20.2
(-0.5)
A 		4.6
(-3)
A 		27.3
(0.7)
A 		41.9
(3)
A 		37
B 19.3
(-2.9)
A 		53.1
(3)
P 		18.8
(-3)
A 		22.7
(-2.3)
A 		34
C 2.2
(-3)
A 		22.2
(3)
A 		4.6
(-2.3)
A 		20.9
(2.6)
A 		20
avr 13.9
(-3) 		26.6
(2.2) 		16.9
(-1.8) 		28.5
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 2
(-2.9)
A 		1.1
(-3)
A 		19.8
(-0.6)
A 		3.1
(-2.7)
A 		47.4
(3)
A 		8.3
(-2.1)
A 		46
B 21.5
(0.1)
A 		16.2
(-1.2)
A 		33.4
(3)
A 		17.9
(-0.8)
A 		8.9
(-3)
A 		13.1
(-2)
A 		25
C 1.8
(-3)
A 		24.6
(1.7)
A 		16.6
(0.1)
A 		30.8
(3)
A 		7.7
(-1.8)
A 		16.9
(0.1)
A 		29
avr 8.4
(-3) 		14
(-0.7) 		23.3
(3) 		17.3
(0.6) 		21.3
(2.2) 		12.8
(-1.2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.3
(3)
A 		1
(-3)
A 		7.1
(2.8)
A 		6.1
(1.9)
A 		6
B 6.1
(-1.8)
A 		13.1
(3)
P 		4.4
(-3)
A 		4.8
(-2.7)
A 		9
C 0.7
(-3)
A 		6.4
(3)
A 		1.6
(-2.1)
A 		3.5
(-0.1)
A 		6
avr 4.7
(-2.3) 		6.8
(3) 		4.4
(-3) 		4.8
(-2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.4
(-3)
A 		4.3
(-1.3)
A 		0.8
(-2.8)
A 		14.3
(3)
A 		2
(-2.3)
A 		14
B 7.5
(2.2)
A 		5.4
(-0.6)
A 		8.1
(3)
A 		4.7
(-1.5)
A 		3.6
(-3)
A 		4.9
(-1.3)
A 		5
C 0.7
(-3)
A 		7.5
(3)
A 		4.2
(0.1)
A 		6.2
(1.9)
A 		2.5
(-1.4)
A 		5.7
(1.4)
A 		7
avr 2.9
(-3) 		4.4
(-0.7) 		5.5
(1) 		3.9
(-1.5) 		6.8
(3) 		4.2
(-1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13509
Sequence Type Exemplar sequence
Representative Public ID F40D4.5 NCBI
Target Description F40D4.5 /REP_DB=WormBase Gene ID /WP=CE19839 /TR=Q9XV30 /GB=CAB04364.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074946 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-1) (srsx-1) mRNA, complete cds. 11/11 None
SNAP00000026447 ENSEMBL cdna:SNAP chromosome:CEL140:V:17179294:17179835:-1 10/11 None
GENEFINDER00000026452 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17179294:17180645:-1 11/11 None
F40D4.5 ENSEMBL cdna:known chromosome:CEL140:V:17179294:17180645:-1 gene:F40D4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17179293-17180645(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srsx-1
Ensembl F40D4.5
Entrez Gene 185523 Entrez gene
SwissProt Q9XV30 EMBL-EBI
WormBase CE19839 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04364 Hypothetical protein F40D4.5 [Caenorhabditis elegans] ref|NP_507347.1| Serpentine Receptor, class SX family member (srsx-1) [Caenorhabditis elegans] 1.0E-167
blast CAB04140 Hypothetical protein F20E11.2 [Caenorhabditis elegans] ref|NP_507410.2| Serpentine Receptor, class SX family member (srsx-2) [Caenorhabditis elegans] 1.0E-159
blast AAK71417 Serpentine receptor, class sx protein 3 [Caenorhabditis elegans] ref|NP_505041.1| Serpentine Receptor, class SX family member (srsx-3) [Caenorhabditis elegans] 1.0E-121
blast CAB04364 Hypothetical protein F40D4.5 [Caenorhabditis elegans] ref|NP_507347.1| Serpentine Receptor, class SX family member (srsx-1) [Caenorhabditis elegans] 2.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507347.1 7 6-28,49-71,86-108,121-143,170-192,212-234,244-263
F40D4.5 7 6-28,49-71,86-108,121-143,170-192,212-234,244-263
SNAP00000026447 3 25-47,67-89,99-118
GENEFINDER00000026452 7 6-28,49-71,86-108,121-143,170-192,212-234,244-263
Sequence
Target Sequence 
>C. ELEGANS:179471_AT
tattgatcattgttttcttcaccactttctatcgtaaaattggaaccatcaattatattt
ccatgatgctagtcattccctttatatattcagcatttacagttgcattgggatttttaa
aaatgaatgatgaagtaataatcttttgtaatccgccaattgggcttcatccagatgtcg
gcagattttggtcaatgtcaaatgttatattcaatacaatcacactctttttatttgtgt
tcttaatgattgtattccactttaaaggaaagaagcagaaaagtgacactagaaagttga
tgaaaagtttgaaagtttccgtgattgtcttcatcttctcttggtacatgtgcatgcttg
caaacgatttgtttgtcgcaattggaataactgggccgcttcttgtattttgtaagagca
atatggtatttttcgcactcgtctgttttgcccaaccattttatgtgatgctgtggaagt
catcggaatatcgagatgctttcattgatatgtggagtttcttggaatgtgtgaagaacc
tgaaatctagtaaagtattgcacaaggcttcaaatgtatcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGATCATTGTTTTCTTCACCAC 582 665 326 Antisense
ATTCAATACAATCACACTCTTTTTA 269 13 534 Antisense
ACTCTTTTTATTTGTGTTCTTAATG 26 101 549 Antisense
GTTCTTAATGATTGTATTCCACTTT 564 443 564 Antisense
AAGTTTCCGTGATTGTCTTCATCTT 348 157 638 Antisense
AAACGATTTGTTTGTCGCAATTGGA 637 125 687 Antisense
GCAATTGGAATAACTGGGCCGCTTC 116 323 703 Antisense
AATATGGTATTTTTCGCACTCGTCT 376 173 745 Antisense
TATTTTTCGCACTCGTCTGTTTTGC 320 661 752 Antisense
GCTGTGGAAGTCATCGGAATATCGA 171 295 795 Antisense
GCACAAGGCTTCAAATGTATCATCA 599 317 885 Antisense
Sequence Source Affymetrix Proprietary Database