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[179470_at]

Description K08E7.4 /REP_DB=WormBase Gene ID /WP=CE06148 /TR=Q21343 /GB=CAB01227.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 2.1
(-3)
A 		9.4
(-1.9)
A 		41.8
(3)
A 		8.7
(-2)
A 		40
B 3
(-3)
A 		4.4
(-2.6)
A 		23.1
(3)
A 		11.9
(-0.3)
A 		20
C 3
(-3)
A 		5.8
(-2.7)
A 		19.3
(-1)
A 		52.7
(3)
A 		50
avr 2.7
(-3) 		6.5
(-2.1) 		28.1
(3) 		24.4
(2.1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 11.6
(-0.9)
A 		7.7
(-1.7)
A 		2
(-3)
A 		3.7
(-2.6)
A 		6.3
(-2)
A 		29.1
(3)
A 		27
B 12.8
(-1.5)
A 		35
(3)
A 		5.4
(-3)
A 		8.3
(-2.4)
A 		7.7
(-2.5)
A 		26.2
(1.2)
A 		30
C 2.2
(-3)
A 		4.8
(-2.6)
A 		33.8
(1.8)
A 		42.1
(3)
A 		2.8
(-2.9)
A 		6.5
(-2.4)
A 		40
avr 8.9
(-1.7) 		15.8
(1.1) 		13.7
(0.2) 		18
(2) 		5.6
(-3) 		20.6
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-3)
A 		2
(-2.3)
A 		10.9
(3)
A 		1.3
(-2.7)
A 		10
B 1
(-3)
A 		1.1
(-2.9)
A 		5.4
(3)
A 		2.5
(-1)
A 		4
C 1
(-3)
A 		1.7
(-2.5)
A 		6.7
(1.3)
A 		8.9
(3)
A 		8
avr 0.9
(-3) 		1.6
(-2.4) 		7.7
(3) 		4.2
(-0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.1
(-1.5)
A 		2.7
(-0.9)
A 		0.4
(-3)
A 		0.9
(-2.6)
A 		1.9
(-1.7)
A 		7.1
(3)
A 		7
B 4.5
(-1.2)
A 		11.7
(3)
A 		1.3
(-3)
A 		2.2
(-2.5)
A 		3.1
(-2)
A 		9.8
(1.9)
A 		10
C 0.8
(-3)
A 		1.5
(-2.5)
A 		8.6
(3)
A 		8.5
(2.9)
A 		0.9
(-2.9)
A 		2.2
(-1.9)
A 		8
avr 2.5
(-2.3) 		5.3
(1.5) 		3.4
(-1.1) 		3.9
(-0.4) 		2
(-3) 		6.4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8487
Sequence Type Exemplar sequence
Representative Public ID K08E7.4 NCBI
Target Description K08E7.4 /REP_DB=WormBase Gene ID /WP=CE06148 /TR=Q21343 /GB=CAB01227.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070007 NCBI Caenorhabditis elegans K08E7.4 (K08E7.4) mRNA, complete cds. 11/11 None
GENEFINDER00000042652 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12570677:12571192:-1 11/11 None
K08E7.4 ENSEMBL cdna:known chromosome:CEL140:IV:12570677:12571192:-1 gene:K08E7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042645 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12570682-12571198(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08E7.4
Entrez Gene 187162 Entrez gene
SwissProt Q21343 EMBL-EBI
WormBase CE06148 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01227 Hypothetical protein K08E7.4 [Caenorhabditis elegans] ref|NP_502408.1| K08E7.4 [Caenorhabditis elegans] 3.0E-66
blast CAB54462 Hypothetical protein Y53F4A.2 [Caenorhabditis elegans] ref|NP_497080.1| Y53F4A.2 [Caenorhabditis elegans] 1.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502408.1 1 56-78
K08E7.4 1 56-78
GENEFINDER00000042652 1 56-78
Sequence
Target Sequence 
>C. ELEGANS:179470_AT
tgaatttccgtgaacatttcttccccttacaatttctcatatataaagcctccgaaaatc
tacaaaattcatattttctcactttacaagattcaaaacctctcggaagcgaaaaaagaa
taatgatctcgcaaatcattttgctattaactctcaatatcttgccatttgtgctggtcc
attgtgggagcaagaagaaaacagtggctccaaaaccggtcgctaaacttatggcagcac
ctgctggaggagtcggaaaaagcgactcattcgattcgaagaaacaagacgttccatcgt
caaagaaggatgaaccagtggctccaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATTTCCGTGAACATTTCTTCCC 565 575 59 Antisense
AATTTCTCATATATAAAGCCTCCGA 43 175 89 Antisense
AGATTCAAAACCTCTCGGAAGCGAA 632 15 147 Antisense
CAAATCATTTTGCTATTAACTCTCA 436 191 190 Antisense
AACTCTCAATATCTTGCCATTTGTG 447 141 207 Antisense
TTGTGCTGGTCCATTGTGGGAGCAA 30 707 227 Antisense
AAACCGGTCGCTAAACTTATGGCAG 550 103 271 Antisense
GCTAAACTTATGGCAGCACCTGCTG 81 303 280 Antisense
GCAGCACCTGCTGGAGGAGTCGGAA 593 313 292 Antisense
GAAACAAGACGTTCCATCGTCAAAG 482 355 339 Antisense
GAAGGATGAACCAGTGGCTCCAAAG 204 335 363 Antisense
Sequence Source Affymetrix Proprietary Database