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[179468_at]

Description B0462.2 /REP_DB=WormBase Gene ID /WP=CE15555 /TR=O45223 /GB=CAB03809.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 36      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 48.9
(-1)
A 		76.2
(3)
A 		43.4
(-1.8)
A 		35.2
(-3)
A 		41
B 35.1
(3)
A 		29.6
(1.8)
A 		8.2
(-3)
A 		20.4
(-0.3)
A 		27
C 44.5
(1.6)
A 		54.4
(3)
A 		12.6
(-3)
A 		47.7
(2)
A 		42
avr 42.8
(1) 		53.4
(3) 		21.4
(-3) 		34.4
(-0.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 27.3
(1.1)
A 		30.4
(1.8)
A 		7.5
(-3)
A 		23.3
(0.3)
A 		36.2
(3)
A 		11.3
(-2.2)
A 		29
B 7.8
(-3)
A 		37.1
(0.9)
A 		18.3
(-1.6)
A 		48
(2.4)
A 		52.8
(3)
A 		24.3
(-0.8)
A 		45
C 6.5
(-3)
A 		71.3
(3)
A 		19.8
(-1.8)
A 		34.8
(-0.4)
A 		40.5
(0.1)
A 		36.8
(-0.2)
A 		65
avr 13.9
(-3) 		46.3
(3) 		15.2
(-2.8) 		35.4
(1) 		43.2
(2.4) 		24.1
(-1.1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.8
(3)
A 		16.5
(2.4)
A 		11.4
(-0)
A 		5.1
(-3)
A 		13
B 11.2
(3)
A 		7.3
(0.5)
A 		1.9
(-3)
A 		4.3
(-1.5)
A 		9
C 14.7
(2.5)
A 		15.6
(3)
A 		4.4
(-3)
A 		8
(-1.1)
A 		11
avr 14.6
(3) 		13.1
(2) 		5.9
(-2.9) 		5.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5
(-0.8)
A 		10.8
(2.9)
A 		1.6
(-3)
A 		5.9
(-0.2)
A 		10.9
(3)
A 		2.7
(-2.3)
A 		9
B 2.7
(-3)
A 		12.3
(0.1)
A 		4.4
(-2.5)
A 		12.7
(0.2)
A 		21.4
(3)
A 		9.1
(-0.9)
A 		19
C 2.4
(-3)
A 		21.8
(3)
A 		5
(-2.2)
A 		7
(-1.6)
A 		13.1
(0.3)
A 		12.3
(0.1)
A 		19
avr 3.4
(-3) 		15
(2.9) 		3.7
(-2.8) 		8.5
(-0.4) 		15.1
(3) 		8
(-0.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179468_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14660
Sequence Type Exemplar sequence
Representative Public ID B0462.2 NCBI
Target Description B0462.2 /REP_DB=WormBase Gene ID /WP=CE15555 /TR=O45223 /GB=CAB03809.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015780 ENSEMBL cdna:SNAP chromosome:CEL140:V:18322684:18324325:-1 11/11 None
GENEFINDER00000015784 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18322684:18323426:-1 9/11 None
B0462.2 ENSEMBL cdna:pseudogene chromosome:CEL140:V:18322684:18324101:-1 gene:B0462.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18322683-18325479(-) 97.98 100.0
Public Domain and Genome References
Ensembl B0462.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T18760 hypothetical protein B0462.2 - Caenorhabditis elegans 1.0E-158
blast T18760 hypothetical protein B0462.2 - Caenorhabditis elegans 3.0E-97
blast CAD88220 Hypothetical protein Y60A3A.22 [Caenorhabditis elegans] ref|NP_001024272.1| Serpentine Receptor, class I family member (sri-67) [Caenorhabditis elegans] 7.0E-68
blast CAA20952 Hypothetical protein Y102A5C.32 [Caenorhabditis elegans] ref|NP_507303.1| Serpentine Receptor, class I family member (sri-69) [Caenorhabditis elegans] 2.0E-66
blast CAA20952 Hypothetical protein Y102A5C.32 [Caenorhabditis elegans] ref|NP_507303.1| Serpentine Receptor, class I family member (sri-69) [Caenorhabditis elegans] 6.0E-39
blast CAA16428 Hypothetical protein Y61B8B.1 [Caenorhabditis elegans] ref|NP_507380.2| Serpentine Receptor, class I family member (sri-70) [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-37
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.6E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000015780 6 7-29,49-71,92-114,148-170,199-221,231-253
GENEFINDER00000015784 3 42-64,93-115,125-147
Sequence
Target Sequence 
>C. ELEGANS:179468_AT
cattgtgttgcgtgttggctcttgtgtttccggctttaccgtgtatgggtcttcagttta
cgtgggcggagccaaacatgcaaatggattatattgataagaaccttcacgaatactaca
gcgggtttaaaaatgttcccaactttgcaatttacatagcttcaccaattcttcaaattg
catacgtcgtcacagcgttggagatgttctcttgtttcctggcactcgttttctttaatc
tcgacctggtccgcatgatggttcgtgtgaaggaacaaatttcgcagcacaactacgaaa
agcatcaggaagctattcgaagtctcctggttcaaacaggtgtttcatgcctttgtacgt
tgccttgcagcgctcttgttctcagtgtggcgttggatcttcgcaaggcgcagtttatca
gcaatgtcatgcttgccgcgttttcgtgtcactcgtcgctcaatatggtatcgctattca
tcttctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGTGTTGCGTGTTGGCTCTTGT 336 217 671 Antisense
TGTGTTTCCGGCTTTACCGTGTATG 306 549 693 Antisense
GGTCTTCAGTTTACGTGGGCGGAGC 171 499 718 Antisense
TTGCATACGTCGTCACAGCGTTGGA 227 703 848 Antisense
TGGAGATGTTCTCTTGTTTCCTGGC 300 549 869 Antisense
CTGGCACTCGTTTTCTTTAATCTCG 514 241 889 Antisense
AATCTCGACCTGGTCCGCATGATGG 8 169 907 Antisense
GAAGCTATTCGAAGTCTCCTGGTTC 597 341 979 Antisense
GTGTTTCATGCCTTTGTACGTTGCC 675 485 1010 Antisense
GTCACTCGTCGCTCAATATGGTATC 580 465 1118 Antisense
TATGGTATCGCTATTCATCTTCTCC 618 655 1134 Antisense
Sequence Source Affymetrix Proprietary Database