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[179467_at]

Description F57B1.1 /REP_DB=WormBase Gene ID /WP=CE11286 /TR=Q20923 /GB=CAB01510.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 37      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 23.6
(2.1)
A 		27
(3)
P 		4.7
(-3)
A 		10.8
(-1.4)
A 		22
B 46.4
(3)
P 		42.6
(2.4)
A 		22.3
(-0.7)
A 		7.6
(-3)
A 		39
C 25
(-2.4)
A 		20.3
(-3)
A 		31.7
(-1.6)
A 		68.2
(3)
A 		48
avr 31.7
(3) 		30
(2.2) 		19.6
(-3) 		28.9
(1.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 53.5
(3)
A 		4.2
(-2.9)
A 		51.8
(2.8)
A 		47.5
(2.3)
A 		3
(-3)
A 		36.4
(1)
A 		51
B 34.5
(3)
A 		11.1
(-1.7)
A 		4.8
(-3)
A 		21.9
(0.5)
A 		30.3
(2.2)
A 		33.4
(2.8)
A 		30
C 25.5
(0.5)
P 		34.3
(1.9)
A 		4.2
(-3)
A 		15.1
(-1.2)
A 		41
(3)
A 		29.6
(1.1)
A 		37
avr 37.8
(3) 		16.5
(-3) 		20.3
(-1.9) 		28.2
(0.3) 		24.8
(-0.7) 		33.1
(1.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.6
(3)
A 		5.9
(0.8)
P 		1.2
(-3)
A 		1.6
(-2.7)
A 		7
B 14.8
(3)
P 		10.5
(1)
A 		5.2
(-1.4)
A 		1.6
(-3)
A 		13
C 8.3
(-0.4)
A 		5.9
(-3)
A 		11.1
(2.6)
A 		11.5
(3)
A 		6
avr 10.6
(3) 		7.4
(-0.4) 		5.8
(-2.1) 		4.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.9
(1.9)
A 		1.5
(-2.7)
A 		11.3
(2.6)
A 		12
(3)
A 		0.9
(-3)
A 		8.9
(1.3)
A 		11
B 12
(2.7)
A 		3.7
(-1.7)
A 		1.2
(-3)
A 		5.8
(-0.6)
A 		12.3
(2.9)
A 		12.5
(3)
A 		11
C 9.5
(1.1)
P 		10.5
(1.6)
A 		1.1
(-3)
A 		3
(-2.1)
A 		13.3
(3)
A 		9.9
(1.3)
A 		12
avr 10.5
(3) 		5.2
(-2.3) 		4.5
(-3) 		6.9
(-0.6) 		8.8
(1.3) 		10.4
(2.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14026
Sequence Type Exemplar sequence
Representative Public ID F57B1.1 NCBI
Target Description F57B1.1 /REP_DB=WormBase Gene ID /WP=CE11286 /TR=Q20923 /GB=CAB01510.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073881(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073881 NCBI Caenorhabditis elegans F57B1.1 (F57B1.1) mRNA, complete cds. 10/11 None
GENEFINDER00000007061 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13196586:13200514:-1 10/11 None
F57B1.1 ENSEMBL cdna:known chromosome:CEL140:V:13196586:13197232:-1 gene:F57B1.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13196585-13197232(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57B1.1
Entrez Gene 186434 Entrez gene
SwissProt Q20923 EMBL-EBI
WormBase CE37976 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE64652 Hypothetical protein CBG09423 [Caenorhabditis briggsae] 1.0E-114
blast AAC78201 Hypothetical protein F54E2.5 [Caenorhabditis elegans] ref|NP_503762.1| F54E2.5 [Caenorhabditis elegans] 1.0E-109
blast CAE64653 Hypothetical protein CBG09424 [Caenorhabditis briggsae] 2.0E-64
blast CAB01510 Hypothetical protein F57B1.1 [Caenorhabditis elegans] ref|NP_506282.2| F57B1.1 [Caenorhabditis elegans] 1.0E-54
blast CAI79172 Hypothetical protein F57B1.8 [Caenorhabditis elegans] emb|CAI79210.1| Hypothetical protein F57B1.8 [Caenorhabditis elegans] ref|NP_001023989.1| F57B1.8 [Caenorhabditis elegans] 4.0E-28
blast CAE64652 Hypothetical protein CBG09423 [Caenorhabditis briggsae] 1.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 5.3E-97
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 1.8E-68
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 5.3E-97
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506282.2 2 41-60,81-103
F57B1.1 2 41-60,81-103
GENEFINDER00000007061 14 2-19,50-72,85-107,127-149,169-191,224-246,267-289,299-318,348-370,398-420,441-463,483-505,546-568,578-600
Sequence
Target Sequence 
>C. ELEGANS:179467_AT
tgctccaccgacaattgtacaaactattgaaattttaatacaatttattcttccaatatt
tattctgggaatatatattgcaattatcattaaaataattttaatgaaaaaagcagcact
caacaaatacgagctcactattttgaaacaggcgatttcatcgtcggttttcctattatg
ccaaactatcaagtttgaaatagcaactgcatttttgataaaacggattattaatacgac
tgaaatatgcgctggagctgcaacgccgtgcttcttctttttcacttcaaaagaaattcg
gaaactcgtttctgtgagagtttctctcactacttcacaagccaattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCACCGACAATTGTACAAACT 411 581 102 Antisense
GCAGCACTCAACAAATACGAGCTCA 650 313 214 Antisense
ACGAGCTCACTATTTTGAAACAGGC 683 91 230 Antisense
GAAACAGGCGATTTCATCGTCGGTT 695 355 246 Antisense
ATCGTCGGTTTTCCTATTATGCCAA 434 35 261 Antisense
TTCCTATTATGCCAAACTATCAAGT 352 685 271 Antisense
AATATGCGCTGGAGCTGCAACGCCG 523 161 345 Antisense
TGCTTCTTCTTTTTCACTTCAAAAG 704 579 370 Antisense
ACTCGTTTCTGTGAGAGTTTCTCTC 643 99 405 Antisense
TGAGAGTTTCTCTCACTACTTCACA 249 569 416 Antisense
CTCACTACTTCACAAGCCAATTCAA 257 229 427 Antisense
Sequence Source Affymetrix Proprietary Database