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[179466_at]

Description T09F5.5 /REP_DB=WormBase Gene ID /WP=CE13529 /TR=O18074 /GB=CAB05806.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 59      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 35.9
(3)
A 		28.2
(-0.5)
A 		22.8
(-3)
A 		23.4
(-2.7)
A 		13
B 2.7
(-3)
A 		27.1
(0.9)
A 		39.8
(3)
A 		5.2
(-2.6)
A 		37
C 34.5
(3)
A 		31.8
(2.4)
A 		22.9
(0.5)
A 		6.6
(-3)
A 		28
avr 24.4
(1.4) 		29
(3) 		28.5
(2.8) 		11.7
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 12.5
(-3)
A 		15.4
(-2.5)
A 		47.6
(3)
A 		16.1
(-2.4)
A 		22.2
(-1.3)
A 		46.2
(2.8)
A 		35
B 36
(2)
A 		23.1
(-2.4)
A 		21.2
(-3)
A 		38.9
(3)
A 		31.6
(0.5)
A 		21.5
(-2.9)
A 		18
C 52.8
(3)
A 		34.5
(0.7)
A 		45.2
(2)
A 		12.3
(-2.2)
A 		5.8
(-3)
A 		43.7
(1.8)
A 		47
avr 33.8
(1.6) 		24.3
(-1.5) 		38
(3) 		22.4
(-2.2) 		19.9
(-3) 		37.1
(2.7) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.1
(3)
A 		6.1
(-1.3)
A 		6
(-1.4)
A 		3.4
(-3)
A 		10
B 0.9
(-3)
A 		6.7
(1.2)
A 		9.2
(3)
A 		1.1
(-2.9)
A 		8
C 11.4
(3)
A 		9.2
(1.7)
A 		8
(1)
A 		1.1
(-3)
A 		10
avr 8.5
(3) 		7.3
(1.9) 		7.7
(2.3) 		1.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.3
(-3)
A 		5.5
(-0.8)
A 		10.4
(2.5)
A 		4.1
(-1.8)
A 		6.7
(-0)
A 		11.2
(3)
A 		9
B 12.5
(2.8)
A 		7.7
(-1)
A 		5.1
(-3)
A 		10.3
(1.1)
A 		12.8
(3)
A 		8
(-0.7)
A 		8
C 19.6
(3)
A 		10.5
(-0.1)
A 		11.5
(0.3)
A 		2.5
(-2.8)
A 		1.9
(-3)
A 		14.6
(1.3)
A 		18
avr 11.5
(3) 		7.9
(-0.7) 		9
(0.5) 		5.6
(-3) 		7.1
(-1.5) 		11.3
(2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14670
Sequence Type Exemplar sequence
Representative Public ID T09F5.5 NCBI
Target Description T09F5.5 /REP_DB=WormBase Gene ID /WP=CE13529 /TR=O18074 /GB=CAB05806.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074338 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-55) (srh-55) mRNA, complete cds. 11/11 None
SNAP00000036437 ENSEMBL cdna:SNAP chromosome:CEL140:V:15156163:15157580:1 11/11 None
GENEFINDER00000036448 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15155482:15159041:1 9/11 None
T09F5.5 ENSEMBL cdna:known chromosome:CEL140:V:15156163:15157580:1 gene:T09F5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15154714-15157580(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-55
Ensembl T09F5.5
Entrez Gene 188344 Entrez gene
SwissProt O18074 EMBL-EBI
WormBase CE34499 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05806 Hypothetical protein T09F5.5 [Caenorhabditis elegans] ref|NP_506739.2| Serpentine Receptor, class H family member (srh-55) [Caenorhabditis elegans] 1.0E-175
blast CAB05806 Hypothetical protein T09F5.5 [Caenorhabditis elegans] ref|NP_506739.2| Serpentine Receptor, class H family member (srh-55) [Caenorhabditis elegans] 1.0E-121
blast CAB04633 Hypothetical protein R08H2.7 [Caenorhabditis elegans] ref|NP_506816.1| Serpentine Receptor, class H family member (srh-52) [Caenorhabditis elegans] 6.0E-93
blast T24759 hypothetical protein T09F5.6 - Caenorhabditis elegans 3.0E-92
blast CAB04633 Hypothetical protein R08H2.7 [Caenorhabditis elegans] ref|NP_506816.1| Serpentine Receptor, class H family member (srh-52) [Caenorhabditis elegans] 2.0E-66
blast T24759 hypothetical protein T09F5.6 - Caenorhabditis elegans 5.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.5E-37
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-117
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506739.2 6 67-89,104-126,146-165,208-230,250-272,287-309
T09F5.5 6 67-89,104-126,146-165,208-230,250-272,287-309
SNAP00000036437 6 67-89,104-126,146-165,208-230,250-272,287-309
GENEFINDER00000036448 10 45-67,82-104,125-147,162-184,204-223,263-285,306-328,386-408,435-457,472-491
Sequence
Target Sequence 
>C. ELEGANS:179466_AT
ggagctattctaccaccatatttagaaacatttgatattcagaaaatggcattagaagcc
ttgaagattgccccatgtcccgtaaaagaattcttcgatcctcgtctattctttgtcacc
gacaaaacgacacttatgactatgctaatgggtcttcaaacgttgaccctcgcccctcag
ggaacattttacactttgagcacgtggtatcatctcgtatattcccacagctcacaggta
tcaccagagactcggaaaatgcagtggagattttttatgagttcttccgtacaaataatg
attccaattggtgttttaacgttcccattattctatgtctggttttctttaaactctgga
tattataatcaagaactgaataaccatgttatcgtcattgcttcttcccatggactactt
gcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTATTCTACCACCATATTTAG 547 519 1141 Antisense
AGAAGCCTTGAAGATTGCCCCATGT 671 73 1194 Antisense
TTGCCCCATGTCCCGTAAAAGAATT 157 699 1208 Antisense
CTCGTCTATTCTTTGTCACCGACAA 144 233 1241 Antisense
TGGGTCTTCAAACGTTGACCCTCGC 671 551 1289 Antisense
GCCCCTCAGGGAACATTTTACACTT 354 285 1312 Antisense
CGTGGTATCATCTCGTATATTCCCA 49 245 1343 Antisense
AGCTCACAGGTATCACCAGAGACTC 5 81 1369 Antisense
TAACGTTCCCATTATTCTATGTCTG 297 639 1457 Antisense
CCATGTTATCGTCATTGCTTCTTCC 526 271 1524 Antisense
TTCTTCCCATGGACTACTTGCTTCA 650 689 1542 Antisense
Sequence Source Affymetrix Proprietary Database