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[179465_at]

Description W09D6.3 /REP_DB=WormBase Gene ID /WP=CE19017 /TR=Q9XUJ3 /GB=CAB04945.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 03      6grp_cgc > 56      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 30.8
(-0.6)
A 		24.5
(-1.7)
A 		16.5
(-3)
A 		52.3
(3)
A 		36
B 11.4
(-1.7)
A 		4.8
(-3)
A 		8.2
(-2.3)
A 		34.6
(3)
A 		30
C 4.1
(-3)
A 		6.7
(-2.7)
A 		5
(-2.9)
A 		50.3
(3)
A 		46
avr 15.4
(-2.1) 		12
(-2.6) 		9.9
(-3) 		45.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 21.3
(-0.4)
A 		1
(-3)
A 		47.5
(3)
A 		9.6
(-1.9)
A 		22.1
(-0.3)
A 		11.7
(-1.6)
A 		47
B 3.8
(-3)
A 		17.4
(-0.5)
A 		12.1
(-1.4)
A 		35.9
(3)
A 		23.8
(0.7)
A 		32.7
(2.4)
A 		32
C 23.3
(3)
A 		10.5
(-0.6)
A 		8.4
(-1.2)
A 		2.2
(-3)
A 		3.2
(-2.7)
A 		16.1
(1)
A 		21
avr 16.1
(-0) 		9.6
(-3) 		22.7
(3) 		15.9
(-0.1) 		16.4
(0.1) 		20.2
(1.9) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.2
(3)
A 		5.3
(-2.1)
A 		4.3
(-3)
A 		7.7
(-0)
A 		7
B 3.6
(-0.7)
A 		1.2
(-3)
A 		1.9
(-2.3)
A 		7.4
(3)
A 		6
C 1.4
(-3)
A 		1.9
(-2.6)
A 		1.7
(-2.7)
A 		8.5
(3)
A 		7
avr 5.4
(0.2) 		2.8
(-2.8) 		2.6
(-3) 		7.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.9
(-0.9)
A 		0.4
(-3)
A 		10.3
(3)
A 		2.4
(-1.8)
A 		6.7
(0.8)
A 		2.9
(-1.5)
A 		10
B 1.3
(-3)
A 		5.8
(-0.5)
A 		2.9
(-2.1)
A 		9.5
(1.5)
A 		9.7
(1.6)
A 		12.2
(3)
A 		11
C 8.6
(3)
A 		3.2
(-1)
A 		2.1
(-1.8)
A 		0.5
(-3)
A 		1
(-2.6)
A 		5.4
(0.6)
A 		8
avr 4.6
(-0.6) 		3.1
(-3) 		5.1
(0.2) 		4.1
(-1.4) 		5.8
(1.4) 		6.8
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6644
Sequence Type Exemplar sequence
Representative Public ID W09D6.3 NCBI
Target Description W09D6.3 /REP_DB=WormBase Gene ID /WP=CE19017 /TR=Q9XUJ3 /GB=CAB04945.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067025 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-246) (str-246) mRNA, complete cds. 11/11 None
SNAP00000027409 ENSEMBL cdna:SNAP chromosome:CEL140:III:11074413:11079323:1 11/11 None
GENEFINDER00000027419 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11077581:11079323:1 11/11 None
W09D6.3 ENSEMBL cdna:known chromosome:CEL140:III:11077581:11079323:1 gene:W09D6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11077576-11079319(+) 86.96 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-246
Ensembl W09D6.3
Entrez Gene 189316 Entrez gene
SwissProt Q9XUJ3 EMBL-EBI
WormBase CE19017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04945 Hypothetical protein W09D6.3 [Caenorhabditis elegans] ref|NP_499426.1| Seven TM Receptor family member (str-246) [Caenorhabditis elegans] 0.0
blast CAB04945 Hypothetical protein W09D6.3 [Caenorhabditis elegans] ref|NP_499426.1| Seven TM Receptor family member (str-246) [Caenorhabditis elegans] 1.0E-109
blast CAE67625 Hypothetical protein CBG13177 [Caenorhabditis briggsae] 1.0E-88
blast CAB04011 Hypothetical protein C55A1.3 [Caenorhabditis elegans] ref|NP_506888.2| Seven TM Receptor family member (str-248) [Caenorhabditis elegans] 3.0E-86
blast CAE67625 Hypothetical protein CBG13177 [Caenorhabditis briggsae] 4.0E-86
blast CAB04011 Hypothetical protein C55A1.3 [Caenorhabditis elegans] ref|NP_506888.2| Seven TM Receptor family member (str-248) [Caenorhabditis elegans] 3.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499426.1 7 10-28,40-62,85-107,128-150,198-220,245-267,282-304
W09D6.3 7 10-28,40-62,85-107,128-150,198-220,245-267,282-304
SNAP00000027409 4 7-29,34-56,232-254,281-303
GENEFINDER00000027419 6 10-28,40-62,85-107,128-150,201-223,244-266
Sequence
Target Sequence 
>C. ELEGANS:179465_AT
ggaataccttgaacccagaaatcttactctgagcgatgttgattacgttggagcgcactt
tcatcatacagatagctatggaaatcaatttattaattggaattcaatgattgcacttgt
catgatgacaattgccataatgctcagcttcactactgtaatcctctgtggcttaaaaat
ttacaaagatgcgcaggaaaacttgtctctgaggtcctcaaccgataataatattcagtc
tcaaatcttctgggctctggttctccagacaattattccagtagtacttatgcattttcc
tgctggaattggatatttattttctatgctgaatcggtcaacagagatattgggtgaaat
cccggcgattaccatttttatgtacccggctttggacccgctacccagtttctttattat
tag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATACCTTGAACCCAGAAATCTT 399 531 498 Antisense
TTGGAGCGCACTTTCATCATACAGA 96 705 545 Antisense
TTGCCATAATGCTCAGCTTCACTAC 590 701 629 Antisense
GCTTCACTACTGTAATCCTCTGTGG 200 305 644 Antisense
AAAACTTGTCTCTGAGGTCCTCAAC 172 127 695 Antisense
CAGTCTCAAATCTTCTGGGCTCTGG 541 207 733 Antisense
GGTTCTCCAGACAATTATTCCAGTA 512 505 756 Antisense
TCCAGTAGTACTTATGCATTTTCCT 50 591 774 Antisense
GGTGAAATCCCGGCGATTACCATTT 637 499 850 Antisense
TACCATTTTTATGTACCCGGCTTTG 287 647 867 Antisense
CGCTACCCAGTTTCTTTATTATTAG 473 255 896 Antisense
Sequence Source Affymetrix Proprietary Database