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[179464_at]

Description ZK550.1 /REP_DB=WormBase Gene ID /WP=CE20431 /TR=Q9XUB0 /GB=CAB05316.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.4
(0.8)
A 		3.2
(-3)
A 		7.7
(-0.2)
A 		12.9
(3)
A 		10
B 3.3
(-3)
A 		7.5
(-0.3)
A 		6.3
(-1.1)
A 		12.7
(3)
A 		9
C 11.6
(0.7)
A 		4.9
(-3)
A 		8.9
(-0.8)
A 		15.7
(3)
A 		11
avr 8.1
(-1) 		5.2
(-3) 		7.6
(-1.3) 		13.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 9.2
(2.5)
A 		8.9
(2.2)
A 		9.8
(3)
A 		3.1
(-3)
A 		7.5
(0.9)
A 		8.5
(1.8)
A 		7
B 12.3
(0)
A 		12.7
(0.6)
A 		10.9
(-2.1)
A 		12.5
(0.3)
A 		10.3
(-3)
A 		14.3
(3)
A 		4
C 2.7
(-3)
A 		36.3
(3)
A 		6.5
(-2.3)
A 		14.2
(-0.9)
A 		2.5
(-3)
A 		3.9
(-2.8)
A 		34
avr 8.1
(-2.4) 		19.3
(3) 		9.1
(-1.9) 		9.9
(-1.5) 		6.8
(-3) 		8.9
(-2) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.4
(3)
A 		0.7
(-3)
A 		2
(-0.1)
A 		1.9
(-0.3)
A 		3
B 1.1
(-3)
A 		1.9
(-0)
A 		1.5
(-1.5)
A 		2.7
(3)
A 		2
C 3.9
(3)
A 		1.4
(-3)
A 		3.1
(1.1)
A 		2.6
(-0.1)
A 		3
avr 2.8
(3) 		1.3
(-3) 		2.2
(0.6) 		2.4
(1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.7
(-0.8)
A 		3.2
(3)
A 		2.1
(0.3)
A 		0.8
(-3)
A 		2.3
(0.7)
A 		2.1
(0.3)
A 		2
B 4.3
(0.7)
A 		4.2
(0.5)
A 		2.7
(-3)
A 		3.3
(-1.6)
A 		4.2
(0.5)
A 		5.3
(3)
A 		3
C 1
(-2.9)
A 		11.1
(3)
A 		1.7
(-2.5)
A 		2.9
(-1.8)
A 		0.8
(-3)
A 		1.3
(-2.7)
A 		10
avr 2.3
(-2.9) 		6.2
(3) 		2.2
(-3) 		2.3
(-2.9) 		2.4
(-2.7) 		2.9
(-2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9268
Sequence Type Exemplar sequence
Representative Public ID ZK550.1 NCBI
Target Description ZK550.1 /REP_DB=WormBase Gene ID /WP=CE20431 /TR=Q9XUB0 /GB=CAB05316.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070656 NCBI Caenorhabditis elegans ZK550.1 (ZK550.1) mRNA, complete cds. 11/11 None
SNAP00000029242 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17239896:17242070:1 10/11 None
ZK550.1 ENSEMBL cdna:known chromosome:CEL140:IV:17239896:17241809:1 gene:ZK550.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029249 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17239901-17241815(+) 92.37 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK550.1
Entrez Gene 191348 Entrez gene
SwissProt Q9XUB0 EMBL-EBI
WormBase CE20431 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05316 Hypothetical protein ZK550.1 [Caenorhabditis elegans] ref|NP_503057.1| ZK550.1 [Caenorhabditis elegans] 0.0
blast CAB05316 Hypothetical protein ZK550.1 [Caenorhabditis elegans] ref|NP_503057.1| ZK550.1 [Caenorhabditis elegans] 1.0E-163
blast CAA97423 Hypothetical protein C08F8.4 [Caenorhabditis elegans] ref|NP_502091.1| C08F8.4 [Caenorhabditis elegans] 3.0E-99
blast CAA97423 Hypothetical protein C08F8.4 [Caenorhabditis elegans] ref|NP_502091.1| C08F8.4 [Caenorhabditis elegans] 2.0E-94
blast CAE57410 Hypothetical protein CBG00365 [Caenorhabditis briggsae] 1.0E-92
blast CAE57410 Hypothetical protein CBG00365 [Caenorhabditis briggsae] 6.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 1.1E-23
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 4.4E-17
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 3.7E-25
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 3.0E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503057.1 5 35-54,67-89,109-128,300-322,337-359
ZK550.1 5 35-54,67-89,109-128,300-322,337-359
SNAP00000029242 2 80-102,114-136
Sequence
Target Sequence 
>C. ELEGANS:179464_AT
gattccgagtctgctggatttcgcgtcgtatatgttcgctttccagagcgtaatcatcgg
accaacaaatcactactccaactggtcagcttacctggatctgaaacttgttccgaaatt
tgagagaaccggaaggccattcgactcaacttcgactgtgttcgagaaatttaaagttgc
aattgcattatcttcgttctgctcagctctgtatagcctccttccaattcctctgacgaa
gtatccaacaatcagcgagtataatctgctctctaccaactgtaacgtttggactgatgc
ctggcttcgacgaatcgtctacgagagagttgaagatccataccgtgtcattgcagttta
tgtaacaggcgttgcatggcacggtctcgctgttgaatactacttatctttcttgacaag
tgctatattcactttgttggctaaggttggttcaacactatttcaagctataaaaatggc
tgccaataccgtttttcctctattagtcttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCGAGTCTGCTGGATTTCGCG 170 431 540 Antisense
GTCGTATATGTTCGCTTTCCAGAGC 306 473 564 Antisense
ACTACTCCAACTGGTCAGCTTACCT 562 101 611 Antisense
GAAGGCCATTCGACTCAACTTCGAC 59 333 671 Antisense
CTCCTTCCAATTCCTCTGACGAAGT 148 235 757 Antisense
AGCGAGTATAATCTGCTCTCTACCA 124 81 793 Antisense
GACTGATGCCTGGCTTCGACGAATC 681 373 831 Antisense
AGATCCATACCGTGTCATTGCAGTT 658 65 873 Antisense
GTAACAGGCGTTGCATGGCACGGTC 506 461 901 Antisense
CGGTCTCGCTGTTGAATACTACTTA 52 245 921 Antisense
CCGTTTTTCCTCTATTAGTCTTGCA 624 263 1028 Antisense
Sequence Source Affymetrix Proprietary Database