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[179463_at] 7TM chemoreceptor, srw family

Description F26D2.9 /REP_DB=WormBase Gene ID /WP=CE18639 /TR=Q9XV63 /GB=CAB04179.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 43      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 8.3
(-2.1)
A 		33.9
(3)
A 		3.6
(-3)
A 		7.1
(-2.3)
A 		30
B 5.1
(-3)
A 		8.7
(2)
A 		8.2
(1.3)
A 		9.4
(3)
A 		4
C 7.5
(3)
A 		5.9
(-2.3)
A 		5.7
(-3)
A 		6.2
(-1.3)
A 		2
avr 7
(-2.3) 		16.2
(3) 		5.8
(-3) 		7.6
(-2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 6.8
(-2.5)
A 		5.9
(-2.7)
A 		9
(-2.1)
A 		25.5
(1.1)
A 		35
(3)
A 		4.2
(-3)
A 		31
B 3.7
(-2.8)
A 		2.8
(-2.9)
A 		11.4
(-1.9)
A 		49.4
(3)
A 		4.4
(-2.7)
A 		2.4
(-3)
A 		47
C 6.8
(-2.7)
A 		23.9
(1.5)
A 		15.1
(-0.7)
A 		10.9
(-1.7)
A 		5.8
(-3)
A 		29.7
(3)
A 		24
avr 5.8
(-3) 		10.9
(-1.7) 		11.8
(-1.4) 		28.6
(3) 		15.1
(-0.6) 		12.1
(-1.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3
(-1.1)
A 		7.4
(3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		7
B 1.6
(-3)
A 		2.2
(3)
A 		1.9
(-0)
A 		2
(1)
A 		1
C 2.5
(3)
A 		1.7
(-0.2)
A 		2
(1)
A 		1
(-3)
A 		2
avr 2.4
(-0.4) 		3.8
(3) 		1.6
(-2.3) 		1.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		2.1
(-2.3)
A 		2
(-2.4)
A 		6.5
(0.4)
A 		10.6
(3)
A 		1
(-3)
A 		10
B 1.3
(-2.8)
A 		0.9
(-3)
A 		2.8
(-2.1)
A 		13.1
(3)
A 		1.8
(-2.6)
A 		0.9
(-3)
A 		12
C 2.5
(-2.6)
A 		7.3
(1.1)
A 		3.8
(-1.6)
A 		2.2
(-2.8)
A 		1.9
(-3)
A 		9.9
(3)
A 		8
avr 1.7
(-3) 		3.4
(-1.2) 		2.9
(-1.7) 		7.3
(3) 		4.8
(0.3) 		3.9
(-0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179463_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14016
Sequence Type Exemplar sequence
Representative Public ID F26D2.9 NCBI
Target Description F26D2.9 /REP_DB=WormBase Gene ID /WP=CE18639 /TR=Q9XV63 /GB=CAB04179.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074749 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-48) (srw-48) mRNA, complete cds. 11/11 None
F26D2.9 ENSEMBL cdna:known chromosome:CEL140:V:16423579:16425149:1 gene:F26D2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16423578-16425149(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-48
Ensembl F26D2.9
Entrez Gene 184964 Entrez gene
SwissProt Q9XV63 EMBL-EBI
WormBase CE18639 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04179 Hypothetical protein F26D2.9 [Caenorhabditis elegans] ref|NP_507150.1| Serpentine Receptor, class W family member (srw-48) [Caenorhabditis elegans] 1.0E-172
blast CAB07190 Hypothetical protein F14F8.6 [Caenorhabditis elegans] ref|NP_507223.1| Serpentine Receptor, class W family member (srw-44) [Caenorhabditis elegans] 7.0E-75
blast CAE17813 Hypothetical protein F14F8.11 [Caenorhabditis elegans] ref|NP_001023799.1| Serpentine Receptor, class W family member (srw-42) [Caenorhabditis elegans] 1.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 7.9E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507150.1 6 42-64,71-90,122-144,165-187,244-266,287-309
F26D2.9 6 42-64,71-90,122-144,165-187,244-266,287-309
Sequence
Target Sequence 
>C. ELEGANS:179463_AT
gtgcctccactctcatatatagatatgaccatttttgtagttttgaatgcattagatatg
atttccgtggacctgtcagtttggtttgcagttggtatgaccacatttcgtgctttaatc
atgcgttacccatttcagccacgaatcaactcactcgttacatcaaaagctggtgtgtat
gcagtaattcctacgtccctgctgacattattatttttggcattttatcatcatagactc
actcttcacccaatatccatttggcagccttcccccgattgtttagattttccatcaaac
tatacacaaattgagtactattggctggcgactgatttctcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCTCCACTCTCATATATAGATA 42 479 352 Antisense
ATGATTTCCGTGGACCTGTCAGTTT 12 47 409 Antisense
GACCACATTTCGTGCTTTAATCATG 622 381 450 Antisense
TAATCATGCGTTACCCATTTCAGCC 628 635 467 Antisense
ATTTCAGCCACGAATCAACTCACTC 250 15 483 Antisense
GTGTATGCAGTAATTCCTACGTCCC 480 485 526 Antisense
CCTACGTCCCTGCTGACATTATTAT 246 269 541 Antisense
TATCATCATAGACTCACTCTTCACC 248 659 577 Antisense
CCAATATCCATTTGGCAGCCTTCCC 207 277 601 Antisense
TCCCCCGATTGTTTAGATTTTCCAT 599 593 622 Antisense
ATTGGCTGGCGACTGATTTCTCAGG 511 3 671 Antisense
Sequence Source Affymetrix Proprietary Database