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[179462_at]

Description C12D8.6 /REP_DB=WormBase Gene ID /WP=CE05270 /TR=Q17934 /GB=CAA98231.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 160.6
(-3)
A 		204.2
(-1.1)
A 		164
(-2.9)
A 		297.1
(3)
P 		137
B 264.9
(3)
A 		139
(-2.1)
A 		124.5
(-2.7)
A 		117.2
(-3)
A 		148
C 289.1
(3)
P 		65.7
(-3)
A 		89.9
(-2.4)
A 		254.1
(2.1)
P 		223
avr 238.2
(3) 		136.3
(-2.5) 		126.1
(-3) 		222.8
(2.2) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 311.5
(3)
M 		185.9
(-0.7)
A 		138.9
(-2.1)
M 		135.5
(-2.2)
A 		181.2
(-0.8)
A 		106.5
(-3)
A 		205
B 10.3
(-3)
A 		163.7
(1.1)
A 		222.8
(2.6)
A 		236.8
(3)
A 		225.9
(2.7)
A 		94.8
(-0.8)
A 		227
C 139.7
(-3)
A 		341.8
(3)
A 		204.2
(-1.1)
A 		267.4
(0.8)
A 		142.7
(-2.9)
A 		160.2
(-2.4)
A 		202
avr 153.8
(-1.2) 		230.5
(3) 		188.6
(0.7) 		213.2
(2.1) 		183.3
(0.4) 		120.5
(-3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 58.5
(3)
A 		44.3
(-2.5)
A 		42.9
(-3)
A 		43.5
(-2.8)
P 		16
B 84.5
(3)
A 		34.3
(-2.1)
A 		28.9
(-2.6)
A 		25
(-3)
A 		60
C 95.7
(3)
P 		18.9
(-3)
A 		31.3
(-2)
A 		42.8
(-1.1)
P 		77
avr 79.6
(3) 		32.5
(-3) 		34.4
(-2.8) 		37.1
(-2.4) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 57.4
(1.7)
M 		66.1
(3)
A 		30.3
(-2.3)
M 		34.4
(-1.7)
A 		54.7
(1.3)
A 		25.9
(-3)
A 		40
B 3.6
(-3)
A 		54.5
(0.5)
A 		54.1
(0.4)
A 		62.7
(1)
A 		91.8
(3)
A 		35.4
(-0.8)
A 		88
C 51.8
(-2.4)
A 		104.3
(3)
A 		52
(-2.4)
A 		53.8
(-2.2)
A 		46.2
(-3)
A 		53.6
(-2.2)
A 		58
avr 37.6
(-3) 		75
(3) 		45.5
(-1.7) 		50.3
(-1) 		64.2
(1.3) 		38.3
(-2.9) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11648
Sequence Type Exemplar sequence
Representative Public ID C12D8.6 NCBI
Target Description C12D8.6 /REP_DB=WormBase Gene ID /WP=CE05270 /TR=Q17934 /GB=CAA98231.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073233 NCBI Caenorhabditis elegans C12D8.6 (C12D8.6) mRNA, complete cds. 11/11 None
C12D8.6 ENSEMBL cdna:known chromosome:CEL140:V:10242227:10243960:-1 gene:C12D8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028483 2/11 Cross Hyb Matching Probes None
NM_001028482 4/11 Cross Hyb Matching Probes None
NM_001028481 2/11 Cross Hyb Matching Probes None
NM_001028479 4/11 Cross Hyb Matching Probes None
NM_001028484 2/11 Cross Hyb Matching Probes None
SNAP00000020994 2/11 Cross Hyb Matching Probes None
SNAP00000020995 2/11 Cross Hyb Matching Probes None
SNAP00000020998 4/11 Cross Hyb Matching Probes None
SNAP00000020999 2/11 Cross Hyb Matching Probes None
SNAP00000021001 4/11 Cross Hyb Matching Probes None
SNAP00000021004 4/11 Cross Hyb Matching Probes None
SNAP00000021005 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021012 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021013 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021014 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021015 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021021 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021022 2/11 Cross Hyb Matching Probes None
C12D8.14 4/11 Cross Hyb Matching Probes None
C12D8.16 2/11 Cross Hyb Matching Probes None
C12D8.17 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10242226-10243960(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D8.6
Entrez Gene 182541 Entrez gene
SwissProt Q17934 EMBL-EBI
WormBase CE05270 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98231 Hypothetical protein C12D8.6 [Caenorhabditis elegans] ref|NP_505634.1| C12D8.6 [Caenorhabditis elegans] 2.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505634.1 2 106-128,143-165
C12D8.6 2 106-128,143-165
Sequence
Target Sequence 
>C. ELEGANS:179462_AT
atcatgcgtttgttatcagccagtgagtgctttgaaactaatctcgagttaatccttctt
ttgtttctcttcgttttttatcctgattttctggaaaaagtttatcacaaaaataaaaat
gacgtcgtcaaggatatggatatttgtggtataaatgaagaacttgacaacattgccgtt
gcagatatgacagaacaacaggctcatcgcctactgcgtgaaaatcaacttgcatggaaa
aaggaaggcacaaaaatacgaagaaaacaaagaagagctttgaaggcatccaaaagaaga
cacgaaatgggaatggtatgccttctctgcgtcctcgccattgccatgtgctcaattgtt
caagaagcttctgctcaatattatggatatgcttcatcttattatccatcatactatgga
ggatatggatacggagcatatggagcttatggaggatatggacttggatctgcatatgct
gga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATGCGTTTGTTATCAGCCAGTG 14 31 22 Antisense
TCGAGTTAATCCTTCTTTTGTTTCT 137 603 65 Antisense
TTCTCTTCGTTTTTTATCCTGATTT 682 691 86 Antisense
GAACTTGACAACATTGCCGTTGCAG 203 349 181 Antisense
TGACAGAACAACAGGCTCATCGCCT 445 571 209 Antisense
GGCTCATCGCCTACTGCGTGAAAAT 534 539 222 Antisense
AATGGGAATGGTATGCCTTCTCTGC 471 163 327 Antisense
GCCATTGCCATGTGCTCAATTGTTC 490 281 358 Antisense
AAGCTTCTGCTCAATATTATGGATA 65 151 386 Antisense
GCTTCATCTTATTATCCATCATACT 660 305 412 Antisense
TGGACTTGGATCTGCATATGCTGGA 647 547 480 Antisense
Sequence Source Affymetrix Proprietary Database