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[179461_at]

Description E01B7.1 /REP_DB=WormBase Gene ID /WP=CE20645 /TR=O17738 /GB=CAB05712.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 44      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 145.4
(0.9)
P 		182.1
(3)
A 		133.5
(0.2)
A 		78.7
(-3)
A 		103
B 108.2
(0.1)
P 		124.4
(3)
A 		110.2
(0.5)
P 		90.5
(-3)
A 		34
C 117.6
(-0.6)
P 		152.2
(3)
P 		95.1
(-3)
P 		101.4
(-2.3)
A 		57
avr 123.7
(0.2) 		152.9
(3) 		112.9
(-0.8) 		90.2
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 130.6
(3)
A 		77.2
(-1.9)
A 		64.6
(-3)
A 		87.7
(-0.9)
A 		89.1
(-0.8)
A 		93.3
(-0.4)
A 		66
B 99.1
(0.6)
A 		59.2
(-3)
A 		82.1
(-0.9)
A 		95.7
(0.3)
A 		125.4
(3)
M 		83.8
(-0.8)
P 		66
C 138.7
(3)
M 		66.1
(-1.3)
A 		91.5
(0.2)
A 		40.6
(-2.9)
A 		126.6
(2.3)
P 		38.3
(-3)
A 		100
avr 122.8
(3) 		67.5
(-3) 		79.4
(-1.7) 		74.7
(-2.2) 		113.7
(2) 		71.8
(-2.5) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 53
(3)
P 		39.5
(1)
A 		34.9
(0.4)
A 		11.5
(-3)
A 		42
B 34.5
(3)
P 		30.7
(1.5)
A 		25.5
(-0.6)
P 		19.3
(-3)
A 		15
C 38.9
(1.9)
P 		43.7
(3)
P 		33.2
(0.6)
P 		17.1
(-3)
A 		27
avr 42.1
(3) 		38
(2.1) 		31.2
(0.5) 		16
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 24.1
(1.5)
A 		27.5
(3)
A 		14.1
(-3)
A 		22.3
(0.7)
A 		26.9
(2.7)
A 		22.7
(0.9)
A 		13
B 34.5
(-0.2)
A 		19.7
(-3)
A 		19.9
(-3)
A 		25.3
(-1.9)
A 		51
(3)
M 		31.3
(-0.8)
P 		31
C 51.4
(3)
M 		20.2
(-1.3)
A 		23.3
(-0.9)
A 		8.2
(-3)
A 		41
(1.6)
P 		12.8
(-2.4)
A 		43
avr 36.7
(2.2) 		22.5
(-1.9) 		19.1
(-2.9) 		18.6
(-3) 		39.6
(3) 		22.3
(-1.9) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179461_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13251
Sequence Type Exemplar sequence
Representative Public ID E01B7.1 NCBI
Target Description E01B7.1 /REP_DB=WormBase Gene ID /WP=CE20645 /TR=O17738 /GB=CAB05712.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075112(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075112 NCBI Caenorhabditis elegans E01B7.1 (E01B7.1) mRNA, complete cds. 11/11 None
SNAP00000036353 ENSEMBL cdna:SNAP chromosome:CEL140:V:17924360:17931229:1 11/11 None
GENEFINDER00000036354 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17927589:17931229:1 11/11 None
E01B7.1 ENSEMBL cdna:known chromosome:CEL140:V:17927571:17931081:1 gene:E01B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17927588-17931081(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E01B7.1
Entrez Gene 180175 Entrez gene
SwissProt O17738 EMBL-EBI
WormBase CE20645 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05712 Hypothetical protein E01B7.1 [Caenorhabditis elegans] ref|NP_507513.1| E01B7.1 [Caenorhabditis elegans] 0.0
blast CAB05712 Hypothetical protein E01B7.1 [Caenorhabditis elegans] ref|NP_507513.1| E01B7.1 [Caenorhabditis elegans] 1.0E-137
blast CAB05712 Hypothetical protein E01B7.1 [Caenorhabditis elegans] ref|NP_507513.1| E01B7.1 [Caenorhabditis elegans] 1.0E-136
blast CAE61652 Hypothetical protein CBG05586 [Caenorhabditis briggsae] 1.0E-113
blast E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 1.0E-93
blast CAB54214 Hypothetical protein E01B7.2 [Caenorhabditis elegans] ref|NP_507512.1| E01B7.2 [Caenorhabditis elegans] 1.0E-92
blast CAE61652 Hypothetical protein CBG05586 [Caenorhabditis briggsae] 9.0E-78
blast AAU05582 Hypothetical protein E02H9.3b [Caenorhabditis elegans] ref|NP_001021235.1| E02H9.3b [Caenorhabditis elegans] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:179461_AT
cgttccgcacgaatttggctgtaactcagcgagcactgcttgctcggctctcaacgtctg
attacgtagttctgatggatgatgatgggcctgaactcgtgaacacgtcacctctgccga
aatccaaaatgtcgttccttttcaaggcgttgacgcagtacaatcaatcggagcgtctac
gcgaacggccaatgttcatggaaggtggattcaaaatgtggaaggctcaatatccgacgt
acacgaagaatgagcagcccgtaacaccccgttcaatcccatccgatgagcttgatgacg
tcatttcggcctatcatcggaactatccgatgatctcggagattcggtaccccgacttga
atacgatgcgtccagagccgacggctcagaccccacctgctccagcggctccaccagcgg
ctccagcactcaatcggcagtcgacaataccgcccgtcgcgatgactcaacgcccaatga
ttccgccttcattgccttcgagcacgcctcctgcacctttaaaacctgtcgcaccgccca
cgccgcccatcttcccgttgctggatcgaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTCCGCACGAATTTGGCTGTAAC 462 247 632 Antisense
TGTAACTCAGCGAGCACTGCTTGCT 343 559 651 Antisense
ATGATGGGCCTGAACTCGTGAACAC 142 47 713 Antisense
AAGGCTCAATATCCGACGTACACGA 226 161 853 Antisense
GAAGAATGAGCAGCCCGTAACACCC 606 337 876 Antisense
TGATGACGTCATTTCGGCCTATCAT 243 567 924 Antisense
GATCTCGGAGATTCGGTACCCCGAC 335 413 963 Antisense
GTACCCCGACTTGAATACGATGCGT 235 459 978 Antisense
TCCAGCACTCAATCGGCAGTCGACA 96 591 1053 Antisense
TGCACCTTTAAAACCTGTCGCACCG 258 575 1143 Antisense
ATCTTCCCGTTGCTGGATCGAACAT 392 29 1180 Antisense
Sequence Source Affymetrix Proprietary Database