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[179458_at]

Description K08E7.6 /REP_DB=WormBase Gene ID /WP=CE11926 /TR=Q21345 /GB=CAB01229.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 45
(0.4)
A 		9.6
(-2.8)
A 		7.7
(-3)
A 		73.6
(3)
A 		66
B 101.6
(3)
A 		8.9
(-2.9)
A 		7.5
(-3)
A 		15.9
(-2.5)
A 		94
C 63.7
(2.5)
A 		10
(-3)
A 		50.7
(1.2)
A 		68.1
(3)
A 		58
avr 70.1
(3) 		9.5
(-3) 		22
(-1.8) 		52.5
(1.3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 12.8
(-2.5)
A 		77.5
(1.7)
A 		65.4
(0.9)
A 		96.6
(3)
A 		62.6
(0.8)
A 		5.9
(-3)
A 		91
B 52.5
(-1.6)
A 		69.9
(3)
A 		60.5
(0.5)
A 		65.3
(1.8)
A 		56.2
(-0.6)
A 		47
(-3)
A 		23
C 69.7
(1.7)
A 		49.7
(0)
A 		13.7
(-3)
A 		84.6
(3)
A 		34.9
(-1.2)
A 		22.5
(-2.3)
A 		71
avr 45
(-0.9) 		65.7
(1.3) 		46.5
(-0.8) 		82.2
(3) 		51.2
(-0.3) 		25.1
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 16.4
(3)
A 		2.1
(-3)
A 		2
(-3)
A 		10.8
(0.7)
A 		14
B 32.4
(3)
A 		2.2
(-2.9)
A 		1.7
(-3)
A 		3.4
(-2.7)
A 		31
C 21.1
(3)
A 		2.9
(-3)
A 		17.7
(1.9)
A 		11.5
(-0.2)
A 		18
avr 23.3
(3) 		2.4
(-3) 		7.1
(-1.7) 		8.6
(-1.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.4
(-2.8)
A 		27.6
(3)
A 		14.2
(-0.1)
A 		24.5
(2.3)
A 		18.9
(1)
A 		1.4
(-3)
A 		26
B 18.3
(-0.5)
A 		23.3
(3)
A 		14.7
(-3)
A 		17.3
(-1.2)
A 		22.8
(2.7)
A 		17.5
(-1)
A 		9
C 25.8
(3)
A 		15.2
(0.1)
A 		3.5
(-3)
A 		17
(0.6)
A 		11.3
(-0.9)
A 		7.5
(-1.9)
A 		22
avr 15.5
(0) 		22
(3) 		10.8
(-2.1) 		19.6
(1.9) 		17.7
(1) 		8.8
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8871
Sequence Type Exemplar sequence
Representative Public ID K08E7.6 NCBI
Target Description K08E7.6 /REP_DB=WormBase Gene ID /WP=CE11926 /TR=Q21345 /GB=CAB01229.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070009 NCBI Caenorhabditis elegans K08E7.6 (K08E7.6) mRNA, complete cds. 11/11 None
SNAP00000042647 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12579025:12581098:-1 11/11 None
GENEFINDER00000042654 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12579025:12581086:-1 11/11 None
K08E7.6 ENSEMBL cdna:known chromosome:CEL140:IV:12578889:12581090:-1 gene:K08E7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12580098-12581092(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08E7.6
Entrez Gene 178212 Entrez gene
SwissProt Q21345 EMBL-EBI
WormBase CE11926 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01229 Hypothetical protein K08E7.6 [Caenorhabditis elegans] ref|NP_502410.1| K08E7.6 [Caenorhabditis elegans] 1.0E-127
blast CAB01229 Hypothetical protein K08E7.6 [Caenorhabditis elegans] ref|NP_502410.1| K08E7.6 [Caenorhabditis elegans] 1.0E-125
blast CAE67914 Hypothetical protein CBG13511 [Caenorhabditis briggsae] 1.0E-111
blast CAE67914 Hypothetical protein CBG13511 [Caenorhabditis briggsae] 1.0E-110
blast CAE67914 Hypothetical protein CBG13511 [Caenorhabditis briggsae] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:179458_AT
cactcaacacgaccatcagggcaaaggaatgaggaagttccgatggataccttggcaaga
gaatgggccactgaaataacgtcgatgggatttgcagaacggacgcctgcacagattaag
caacggattagggatatgagaaaattctctcgaaagcatgcccacaaactgggtatcacc
aacatgaatgcgggacaagaactcgaacgttatgctgaatttagttgggccgagccaaaa
cgacgttcccgtgggccagtacccgattggatgtccggcctggcggaaatcatgatgagc
gaacaggacacaaaagccgacgatgcagactcggcgtcggacatcatggaagccacttat
ggtccgaaagcgaagaggctgaaattacaaaggactgaaatgcaattgcatcagttacag
ttgcatttggatatgaagcagcgagagttgaaacaagaaagagagaaagaagaaggaaat
ggtaatgatgagcaggaggaacgagaaaaaagagatgttagtccggaaactttgcttatt
gagaagaagttgaggttagcggatgccaagttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTCAACACGACCATCAGGGCAAA 81 197 193 Antisense
GGAAGTTCCGATGGATACCTTGGCA 556 531 225 Antisense
GAATGGGCCACTGAAATAACGTCGA 82 163 253 Antisense
GAACGGACGCCTGCACAGATTAAGC 478 325 289 Antisense
ATTCTCTCGAAAGCATGCCCACAAA 352 11 336 Antisense
TGGGCCAGTACCCGATTGGATGTCC 109 555 444 Antisense
GGATGTCCGGCCTGGCGGAAATCAT 182 507 461 Antisense
AAGCCGACGATGCAGACTCGGCGTC 129 149 506 Antisense
ACTCGGCGTCGGACATCATGGAAGC 439 97 521 Antisense
GGAAGCCACTTATGGTCCGAAAGCG 282 529 540 Antisense
TGAGGTTAGCGGATGCCAAGTTGCA 621 549 743 Antisense
Sequence Source Affymetrix Proprietary Database