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[179457_at]

Description B0024.4 /REP_DB=WormBase Gene ID /WP=CE05149 /TR=Q17420 /GB=CAA94877.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_high_8_8 > 63      6grp_highest_nonorm > 60      6grp_total > 18      4grp_total > 48      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 85
(-1.9)
P 		60.8
(-3)
P 		187.3
(3)
P 		83.3
(-1.9)
A 		127
B 126.5
(0.1)
P 		69.4
(-2.2)
A 		199.4
(3)
P 		50.4
(-3)
A 		149
C 92.6
(-1.7)
P 		106
(-1.2)
P 		225.4
(3)
P 		55.2
(-3)
P 		170
avr 101.4
(-1.4) 		78.7
(-2.3) 		204
(3) 		63
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 749
1 2 3 4 5 6 range
A 767.1
(3)
P 		274.4
(-1.8)
P 		204.3
(-2.5)
P 		239.1
(-2.2)
P 		156.8
(-3)
P 		201.9
(-2.6)
P 		610
B 789.9
(3)
P 		319.5
(-1.4)
P 		154.9
(-3)
P 		202.5
(-2.6)
P 		177.2
(-2.8)
P 		175.3
(-2.8)
P 		635
C 856.8
(3)
P 		279.2
(-1.6)
P 		107.5
(-3)
P 		190.4
(-2.3)
P 		159.2
(-2.6)
P 		147.2
(-2.7)
P 		749
avr 804.6
(3) 		291
(-1.7) 		155.6
(-3) 		210.7
(-2.5) 		164.4
(-2.9) 		174.8
(-2.8) 		649
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 30.9
(0)
P 		13.2
(-2.8)
P 		49
(3)
P 		12.2
(-3)
A 		37
B 40.3
(2)
P 		17.1
(-1.9)
A 		46.2
(3)
P 		10.7
(-3)
A 		36
C 30.6
(-1.2)
P 		30.5
(-1.2)
P 		78.5
(3)
P 		9.3
(-3)
P 		69
avr 33.9
(-0.1) 		20.3
(-1.8) 		57.9
(3) 		10.7
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 141.4
(3)
P 		97.6
(0.3)
P 		44.5
(-3)
P 		60.6
(-2)
P 		47.3
(-2.8)
P 		49.2
(-2.7)
P 		97
B 274.9
(3)
P 		106.4
(-1.3)
P 		37.6
(-3)
P 		53.6
(-2.6)
P 		72
(-2.1)
P 		65.4
(-2.3)
P 		237
C 317.6
(3)
P 		85.2
(-1.8)
P 		27.4
(-3)
P 		38.3
(-2.8)
P 		51.5
(-2.5)
P 		49.3
(-2.5)
P 		290
avr 244.6
(3) 		96.4
(-1.3) 		36.5
(-3) 		50.8
(-2.6) 		56.9
(-2.4) 		54.6
(-2.5) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12334
Sequence Type Exemplar sequence
Representative Public ID B0024.4 NCBI
Target Description B0024.4 /REP_DB=WormBase Gene ID /WP=CE05149 /TR=Q17420 /GB=CAA94877.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073247 NCBI Caenorhabditis elegans B0024.4 (B0024.4) mRNA, complete cds. 11/11 None
SNAP00000027130 ENSEMBL cdna:SNAP chromosome:CEL140:V:10300013:10301419:1 11/11 None
GENEFINDER00000027150 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10300013:10301419:1 11/11 None
B0024.4 ENSEMBL cdna:known chromosome:CEL140:V:10299980:10301446:1 gene:B0024.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10300012-10301419(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0024.4
Entrez Gene 179432 Entrez gene
SwissProt Q17420 EMBL-EBI
WormBase CE05149 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94877 Hypothetical protein B0024.4 [Caenorhabditis elegans] ref|NP_505648.1| B0024.4 [Caenorhabditis elegans] 0.0
blast CAE64785 Hypothetical protein CBG09578 [Caenorhabditis briggsae] 1.0E-113
blast CAE66805 Hypothetical protein CBG12167 [Caenorhabditis briggsae] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:179457_AT
tttttctcgaatcctgccgttatgatcaatggaaagcaaatgttctttcctgtcgttgaa
attttctctctgagtttgggagcattttatttcaaatcatcaaaaggcgttcaatttgtg
attagtaatgaatttactgatgtgaacaatcgtcctaccacatctaaaattacaacaggt
ctttatatgaaaccaatcactgtgaatgaccgaaaagtgagcattttcacaggacacgac
gataagcttaatggaactattggagtcaatgttgtgggaagtgttccagcaaatgcaaat
ttttcagtcacatatccaattaaatgggttactattccgacaaatattatccaatcatgg
agtatacctgaaatttctgacagattgggtttggatacaatcaattcggtagctggagaa
gtttttgtacagtattatatgattcaaggaaatcagtcaatcaatccagtgacaacaaca
atgcttccaggacgtcaaactacatcacgaggaattgaaacaacaacaaagtcaaatgca
attgttcaactattcacgtcattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCTCGAATCCTGCCGTTATGA 179 675 589 Antisense
AGCAAATGTTCTTTCCTGTCGTTGA 134 77 623 Antisense
ATTTTCTCTCTGAGTTTGGGAGCAT 174 15 649 Antisense
ACTGATGTGAACAATCGTCCTACCA 230 97 724 Antisense
ATCGTCCTACCACATCTAAAATTAC 468 29 737 Antisense
GAGCATTTTCACAGGACACGACGAT 202 389 807 Antisense
GCAAATTTTTCAGTCACATATCCAA 691 317 883 Antisense
TAAATGGGTTACTATTCCGACAAAT 549 627 909 Antisense
GACAACAACAATGCTTCCAGGACGT 21 367 1059 Antisense
GCTTCCAGGACGTCAAACTACATCA 35 307 1071 Antisense
ATTGTTCAACTATTCACGTCATTTA 396 5 1129 Antisense
Sequence Source Affymetrix Proprietary Database