[Home] | [Total List]

[179455_at]

Description F42E8.2 /REP_DB=WormBase Gene ID /WP=CE10304 /TR=Q20337 /GB=CAB01429.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.6
(-3)
A 		1.6
(-3)
A 		3.2
(3)
A 		3.1
(2.6)
A 		2
B 2.2
(-1.2)
A 		4.5
(3)
A 		1.2
(-3)
A 		2.4
(-0.8)
A 		3
C 1.9
(-2.8)
A 		1.8
(-2.9)
A 		1.7
(-3)
A 		8.5
(3)
A 		7
avr 1.9
(-3) 		2.6
(-1.5) 		2
(-2.8) 		4.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2
(-0.7)
A 		1.8
(-1.6)
A 		2.8
(3)
A 		2.4
(1.2)
A 		1.5
(-3)
A 		2.3
(0.7)
A 		1
B 3.1
(-0.3)
A 		0.9
(-2.8)
A 		1.5
(-2.1)
A 		6.1
(3)
A 		1.3
(-2.3)
A 		0.7
(-3)
A 		5
C 1.4
(-2.5)
A 		1.4
(-2.5)
A 		1.9
(-1.7)
A 		4.7
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		4
avr 2.2
(-1.3) 		1.4
(-2.8) 		2.1
(-1.5) 		4.4
(3) 		1.3
(-3) 		1.4
(-2.8) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(0.6)
A 		0.3
(-3)
A 		0.8
(3)
A 		0.5
(-0.6)
A 		1
B 0.7
(-0)
A 		1.1
(3)
A 		0.3
(-3)
A 		0.5
(-1.5)
A 		1
C 0.6
(-2.3)
A 		0.5
(-3)
A 		0.6
(-2.3)
A 		1.4
(3)
A 		1
avr 0.6
(-3) 		0.6
(-3) 		0.6
(-3) 		0.8
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(3)
A 		0.6
(3)
A 		0.6
(3)
A 		0.5
(0)
A 		0.6
(3)
A 		0
B 1.1
(0.7)
A 		0.3
(-3)
A 		0.4
(-2.5)
A 		1.6
(3)
A 		0.5
(-2.1)
A 		0.3
(-3)
A 		1
C 0.5
(-1.8)
A 		0.4
(-3)
A 		0.5
(-1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1
avr 0.7
(-0) 		0.4
(-3) 		0.5
(-2) 		1
(3) 		0.5
(-2) 		0.4
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13991
Sequence Type Exemplar sequence
Representative Public ID F42E8.2 NCBI
Target Description F42E8.2 /REP_DB=WormBase Gene ID /WP=CE10304 /TR=Q20337 /GB=CAB01429.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073863 NCBI Caenorhabditis elegans F42E8.2 (F42E8.2) mRNA, complete cds. 11/11 None
F42E8.2 ENSEMBL cdna:known chromosome:CEL140:V:13068054:13068578:-1 gene:F42E8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022855 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13068053-13068578(-) 82.66 100.0
Public Domain and Genome References
Gene Title
Ensembl F42E8.2
Entrez Gene 185668 Entrez gene
SwissProt Q20337 EMBL-EBI
WormBase CE10304 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01429 Hypothetical protein F42E8.2 [Caenorhabditis elegans] ref|NP_506264.1| F42E8.2 [Caenorhabditis elegans] 4.0E-51
blast CAA94274 Hypothetical protein K07F5.9 [Caenorhabditis elegans] ref|NP_501767.1| Sperm-Specific family, class P family member (ssp-10) [Caenorhabditis elegans] 3.0E-18
blast AAB54194 Sperm-specific family, class p protein 19 [Caenorhabditis elegans] ref|NP_491000.1| Sperm-Specific family, class P family member (ssp-19) [Caenorhabditis elegans] pdb|1ROW|B Chain B, Structure Of Ssp-19, An Msp-Domain Protein Like Family Member In Caenorhabditis Elegans pdb|1ROW|A Chain A, Structure Of Ssp-19, An Msp-Domain Protein Like Family Member In Caenorhabditis Elegans 4.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.7E-14
Sequence
Target Sequence 
>C. ELEGANS:179455_AT
gacggaaaacgaacctatcatctgttgggcgaactgtcctctttcaattgtaaaagggtt
cattcggaagtacgaggacgagttgaaaggcttcccttgtgagaatgtatgtgctgagaa
gatcatcttcaagtcattcaacaataacgaataccgcattgctccagttttcggatttgt
cgatccatccggatcaaaggatgttgtgatcacccgcactgctggtgctccaaaagatga
taagcttgtcattcattttgcaccagctccagctgatgcaactgatgcttgctgcagtca
ctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGAAAACGAACCTATCATCTGT 240 377 15 Antisense
AACGAACCTATCATCTGTTGGGCGA 380 143 22 Antisense
TATCATCTGTTGGGCGAACTGTCCT 699 659 30 Antisense
CGAACTGTCCTCTTTCAATTGTAAA 472 253 44 Antisense
TCAATTGTAAAAGGGTTCATTCGGA 176 633 58 Antisense
GGGTTCATTCGGAAGTACGAGGACG 111 471 70 Antisense
GAGGACGAGTTGAAAGGCTTCCCTT 598 403 88 Antisense
AAGGCTTCCCTTGTGAGAATGTATG 498 159 101 Antisense
GAATGTATGTGCTGAGAAGATCATC 517 331 117 Antisense
GATGCAACTGATGCTTGCTGCAGTC 247 413 289 Antisense
CAACTGATGCTTGCTGCAGTCACTC 465 187 293 Antisense
Sequence Source Affymetrix Proprietary Database