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[179454_at]

Description C49C3.8 /REP_DB=WormBase Gene ID /WP=CE19747 /TR=Q9XUF7 /GB=CAB05161.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 64      6grp_total > 73      4grp_total > 10      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1742
1 2 3 4 range
A 428.3
(-2.8)
P 		671.9
(-1.7)
P 		390.3
(-3)
P 		1726.3
(3)
P 		1336
B 425.3
(-2.6)
P 		471.8
(-2.4)
P 		296.8
(-3)
P 		2039
(3)
P 		1742
C 553.3
(-2.7)
P 		569.6
(-2.7)
P 		494.5
(-3)
P 		1895.8
(3)
P 		1401
avr 469
(-2.7) 		571.1
(-2.3) 		393.9
(-3) 		1887
(3) 		1493

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 485
1 2 3 4 5 6 range
A 615.6
(-3)
P 		646.8
(-2.6)
P 		1063.5
(2.6)
P 		1093.6
(3)
P 		796.3
(-0.7)
P 		802.3
(-0.7)
P 		478
B 608.5
(-3)
P 		842.5
(1)
P 		810.8
(0.5)
P 		959.1
(3)
P 		840.2
(1)
P 		768.2
(-0.3)
P 		351
C 671.8
(-3)
P 		718.1
(-2)
P 		853.4
(1.1)
P 		936.6
(3)
P 		924.1
(2.7)
P 		777.7
(-0.6)
P 		265
avr 632
(-3) 		735.8
(-1.3) 		909.2
(1.6) 		996.4
(3) 		853.5
(0.6) 		782.7
(-0.5) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 156
(-0.9)
P 		145.8
(-1.3)
P 		102
(-3)
P 		252.7
(3)
P 		151
B 135.6
(-1.9)
P 		116.5
(-2.2)
P 		68.8
(-3)
P 		434.5
(3)
P 		366
C 183.2
(-2.3)
P 		163.8
(-3)
P 		172.4
(-2.7)
P 		319.7
(3)
P 		156
avr 158.3
(-1.8) 		142
(-2.3) 		114.4
(-3) 		335.6
(3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 113.5
(-3)
P 		230
(1.3)
P 		231.6
(1.3)
P 		277.4
(3)
P 		240.3
(1.6)
P 		195.3
(-0)
P 		164
B 211.7
(-2.4)
P 		280.4
(0.5)
P 		196.9
(-3)
P 		254
(-0.6)
P 		341.3
(3)
P 		286.4
(0.7)
P 		144
C 249
(0.3)
P 		219.1
(-1.3)
P 		217.2
(-1.4)
P 		188.3
(-3)
P 		299
(3)
P 		260.3
(0.9)
P 		111
avr 191.4
(-3) 		243.2
(0) 		215.2
(-1.6) 		239.9
(-0.1) 		293.5
(3) 		247.3
(0.3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179454_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9834
Sequence Type Exemplar sequence
Representative Public ID C49C3.8 NCBI
Target Description C49C3.8 /REP_DB=WormBase Gene ID /WP=CE19747 /TR=Q9XUF7 /GB=CAB05161.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070684 NCBI Caenorhabditis elegans C49C3.8 (C49C3.8) mRNA, complete cds. 11/11 None
SNAP00000040198 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17334192:17336601:1 11/11 None
GENEFINDER00000040215 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17332534:17336601:1 11/11 None
C49C3.8 ENSEMBL cdna:known chromosome:CEL140:IV:17335755:17336601:1 gene:C49C3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17335760-17336607(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49C3.8
Entrez Gene 178517 Entrez gene
SwissProt Q9XUF7 EMBL-EBI
WormBase CE19747 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05166 Hypothetical protein C49C3.7 [Caenorhabditis elegans] ref|NP_503083.1| C49C3.7 [Caenorhabditis elegans] 1.0E-151
blast CAB05161 Hypothetical protein C49C3.8 [Caenorhabditis elegans] ref|NP_503085.1| C49C3.8 [Caenorhabditis elegans] 1.0E-138
blast CAB05167 Hypothetical protein C49C3.15 [Caenorhabditis elegans] ref|NP_503084.2| C49C3.15 [Caenorhabditis elegans] 1.0E-112
blast CAB05161 Hypothetical protein C49C3.8 [Caenorhabditis elegans] ref|NP_503085.1| C49C3.8 [Caenorhabditis elegans] 1.0E-106
blast CAB05167 Hypothetical protein C49C3.15 [Caenorhabditis elegans] ref|NP_503084.2| C49C3.15 [Caenorhabditis elegans] 2.0E-92
blast CAE57480 Hypothetical protein CBG00448 [Caenorhabditis briggsae] 7.0E-39
blast CAE57480 Hypothetical protein CBG00448 [Caenorhabditis briggsae] 4.0E-18
Sequence
Target Sequence 
>C. ELEGANS:179454_AT
ggatgtctagccagttacacttggaaaactgattttctcgattatacgttaaatccgatg
gagctaattattccttatcaatctgttattccatcgaagaccgttccgtatcgcaagcgg
cgcatgaatgatttggaagatctcagaaaaataaaagagtgttcaaaacgggcatttatc
tctaactcggaccaatctgaagttccgagtacatcaatgttgaattctatgaaggaaatg
ataactgaagctgttgaaacatcaaacaagaagctcatagaagaattgaaaacttcaaat
gaagcactagtggcacaagtcgcaaattttaaatccaaacatattgaacaaagttctgga
aaacctggaatgagagcatatttggaaggattgaaagggtttctgcatcacttaaatatg
ccagaattagcagacataaaagttcgattgaatactttggaaaaagatctaggagacacg
gatcaaccaattccagtgcaatccattcattcagttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTCTAGCCAGTTACACTTGGA 41 515 211 Antisense
ATTCCTTATCAATCTGTTATTCCAT 686 7 280 Antisense
TATTCCATCGAAGACCGTTCCGTAT 229 661 297 Antisense
TTCCGTATCGCAAGCGGCGCATGAA 662 697 314 Antisense
AAAACGGGCATTTATCTCTAACTCG 193 129 375 Antisense
TTTATCTCTAACTCGGACCAATCTG 133 675 385 Antisense
GACCAATCTGAAGTTCCGAGTACAT 78 385 400 Antisense
GAAGCACTAGTGGCACAAGTCGCAA 346 341 511 Antisense
AAAGGGTTTCTGCATCACTTAAATA 450 119 604 Antisense
GGAGACACGGATCAACCAATTCCAG 584 517 682 Antisense
AGTGCAATCCATTCATTCAGTTCTT 28 61 705 Antisense
Sequence Source Affymetrix Proprietary Database