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[179453_s_at]

Description C25D7.1 /REP_DB=WormBase Gene ID /WP=CE08387 /TR=Q9U3P3 /GB=CAB02771.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 22.7
(3)
A 		4.3
(-3)
A 		6.9
(-2.2)
A 		9
(-1.5)
A 		18
B 14.3
(-1.2)
A 		6
(-3)
A 		33.5
(3)
A 		9.7
(-2.2)
A 		28
C 9.7
(-2.4)
A 		20.8
(-1.5)
A 		2.4
(-3)
A 		76.1
(3)
A 		74
avr 15.6
(-1.5) 		10.4
(-3) 		14.3
(-1.9) 		31.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 6.7
(-2.8)
A 		38.6
(-1.2)
A 		2.9
(-3)
A 		54.6
(-0.4)
A 		81.7
(1)
A 		121.9
(3)
P 		119
B 4.7
(-3)
A 		4.3
(-3)
A 		8.1
(-2.8)
A 		21.9
(-2.3)
A 		111
(1.4)
P 		149.2
(3)
P 		145
C 14.5
(-2.9)
A 		24.4
(-2.5)
A 		11.8
(-3)
A 		42.6
(-1.9)
A 		123.3
(1.1)
A 		173.6
(3)
A 		162
avr 8.6
(-3) 		22.4
(-2.4) 		7.6
(-3) 		39.7
(-1.6) 		105.3
(1.2) 		148.2
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.3
(3)
A 		0.9
(-3)
A 		1.8
(-2.3)
A 		1.3
(-2.7)
A 		7
B 4.6
(-0)
A 		1.5
(-3)
A 		7.8
(3)
A 		2.1
(-2.4)
A 		6
C 3.2
(-1.8)
A 		6
(-0.4)
A 		0.8
(-3)
A 		12.8
(3)
A 		12
avr 5.4
(3) 		2.8
(-3) 		3.5
(-1.4) 		5.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		13.7
(-0.3)
A 		0.6
(-3)
A 		13.9
(-0.3)
A 		24.7
(2)
A 		29.7
(3)
P 		29
B 1.6
(-3)
A 		1.4
(-3)
A 		2
(-2.9)
A 		5.8
(-2.5)
A 		45.1
(1.8)
P 		55.6
(3)
P 		54
C 5.4
(-2.7)
A 		7.5
(-2.5)
A 		3
(-3)
A 		8.6
(-2.4)
A 		39.9
(1)
A 		58.1
(3)
A 		55
avr 2.7
(-2.9) 		7.5
(-2.3) 		1.9
(-3) 		9.4
(-2) 		36.6
(1.5) 		47.8
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179453_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13537
Sequence Type Exemplar sequence
Representative Public ID C25D7.1 NCBI
Target Description C25D7.1 /REP_DB=WormBase Gene ID /WP=CE08387 /TR=Q9U3P3 /GB=CAB02771.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074300(11), NM_074322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074300 NCBI Caenorhabditis elegans C25D7.1 (C25D7.1) mRNA, complete cds. 11/11 None
NM_074322 NCBI Caenorhabditis elegans C01G10.14 (C01G10.14) mRNA, complete cds. 11/11 A 
SNAP00000004629 ENSEMBL cdna:SNAP chromosome:CEL140:V:15107976:15108492:-1 11/11 None
SNAP00000019704 ENSEMBL cdna:SNAP chromosome:CEL140:V:15038887:15039403:-1 11/11 None
GENEFINDER00000019720 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15038887:15039403:-1 11/11 None
C25D7.1 ENSEMBL cdna:known chromosome:CEL140:V:15038887:15039414:-1 gene:C25D7.1 11/11 None
C01G10.14 ENSEMBL cdna:known chromosome:CEL140:V:15107310:15108492:-1 gene:C01G10.14 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15038886-15039403(-) 100.0 100.0
chrV:15107975-15108492(-) 99.34 99.34
Public Domain and Genome References
Gene Title

Ensembl C25D7.1
C01G10.14
Entrez Gene 180007 Entrez gene
180020 Entrez gene
SwissProt Q93173 EMBL-EBI
Q9U3P3 EMBL-EBI
WormBase CE07823 Wormbase
CE08387 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02715 Hypothetical protein C01G10.14 [Caenorhabditis elegans] ref|NP_506723.1| C01G10.14 [Caenorhabditis elegans] 1.0E-155
blast CAB02771 Hypothetical protein C25D7.1 [Caenorhabditis elegans] ref|NP_506701.1| C25D7.1 [Caenorhabditis elegans] 1.0E-71
blast CAB02771 Hypothetical protein C25D7.1 [Caenorhabditis elegans] ref|NP_506701.1| C25D7.1 [Caenorhabditis elegans] 1.0E-70
blast CAB02715 Hypothetical protein C01G10.14 [Caenorhabditis elegans] ref|NP_506723.1| C01G10.14 [Caenorhabditis elegans] 6.0E-70
blast CAB02715 Hypothetical protein C01G10.14 [Caenorhabditis elegans] ref|NP_506723.1| C01G10.14 [Caenorhabditis elegans] 6.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.1E-28
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.9E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506723.1 2 167-189,216-238
C01G10.14 2 167-189,216-238
Sequence
Target Sequence 
>C. ELEGANS:179453_S_AT
aggacgaaatcgatgaggcaaactcagaatcttcaaaagtgccactagcaattgatccag
aggaagccaaactcccaaatgccggcggaaaatcggagcatatggtggtcaacttcacct
caaaacgcatggcgatcaaagtgagatgtggcaatgcactatttcgtgttgagccaactc
acatgatcatcgagccgaacaagtgccgccaactgacaatcaatcggatgcccggaccaa
ttcaaaaggataaagcgatcgttcaatacctccaaattgaaaatgatgtgcaagatccga
agactgcgttcaaagcagcggacagtgctggaactaagattccacacttgaagatcaagc
tggtggccggagcaagtggaggtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACGAAATCGATGAGGCAAACTC 620 55 50 Antisense
CTCAGAATCTTCAAAAGTGCCACTA 308 227 72 Antisense
AGAGGAAGCCAAACTCCCAAATGCC 356 65 108 Antisense
AACTCACATGATCATCGAGCCGAAC 72 139 225 Antisense
ATCATCGAGCCGAACAAGTGCCGCC 696 29 235 Antisense
ATCGGATGCCCGGACCAATTCAAAA 399 35 272 Antisense
TAAAGCGATCGTTCAATACCTCCAA 216 641 300 Antisense
TGCGTTCAAAGCAGCGGACAGTGCT 169 581 354 Antisense
GAACTAAGATTCCACACTTGAAGAT 165 349 380 Antisense
GAAGATCAAGCTGGTGGCCGGAGCA 655 337 399 Antisense
GGTGGCCGGAGCAAGTGGAGGTCGT 235 499 411 Antisense
Sequence Source Affymetrix Proprietary Database