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[179448_at]

Description C18E9.4 /REP_DB=WormBase Gene ID /WP=CE05296 /TR=Q18095 /GB=CAA93855.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 25      6grp_total > 41      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3844
1 2 3 4 range
A 3746.7
(0.7)
P 		4588.3
(3)
P 		4500.4
(2.8)
P 		2399.8
(-3)
P 		2189
B 3253.3
(-2.3)
P 		4712.1
(0.3)
P 		6244.2
(3)
P 		2879
(-3)
P 		3365
C 3755.6
(-0.3)
P 		4727.3
(2.2)
P 		5027.5
(3)
P 		2747.6
(-3)
P 		2280
avr 3585.2
(-0.9) 		4675.9
(1.6) 		5257.4
(3) 		2675.5
(-3) 		2582

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4409
1 2 3 4 5 6 range
A 3901.6
(-0.8)
P 		4215.2
(-0.2)
P 		6027.9
(3)
P 		4312.2
(-0)
P 		3757
(-1)
P 		2644
(-3)
P 		3384
B 4617.8
(-1)
P 		5046.6
(-0.3)
P 		7053
(3)
P 		5102.5
(-0.2)
P 		3425.6
(-3)
P 		3468.2
(-2.9)
P 		3627
C 4933.9
(2.5)
P 		4938.8
(2.6)
P 		4593.9
(1)
P 		5031.3
(3)
P 		3750.5
(-3)
P 		3756
(-3)
P 		1281
avr 4484.4
(-0.2) 		4733.5
(0.3) 		5891.6
(3) 		4815.3
(0.5) 		3644.4
(-2.2) 		3289.4
(-3) 		2602
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1401
1 2 3 4 range
A 1364.2
(3)
P 		996
(0.8)
P 		1176.5
(1.9)
P 		351.3
(-3)
P 		1013
B 1037.4
(0.1)
P 		1163.8
(1)
P 		1446.9
(3)
P 		613.5
(-3)
P 		833
C 1243.2
(0.6)
P 		1359.1
(1.2)
P 		1752.3
(3)
P 		463.3
(-3)
P 		1289
avr 1214.9
(1.5) 		1173
(1.3) 		1458.6
(3) 		476
(-3) 		983

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1185
1 2 3 4 5 6 range
A 719.2
(-2.5)
P 		1499.1
(3)
P 		1312.7
(1.7)
P 		1093.7
(0.2)
P 		1133.7
(0.4)
P 		643.7
(-3)
P 		855
B 1606.8
(1.5)
P 		1679.8
(2.5)
P 		1712.7
(3)
P 		1351.5
(-2.2)
P 		1391.8
(-1.6)
P 		1293.3
(-3)
P 		419
C 1828.8
(3)
P 		1507
(0.6)
P 		1169.2
(-1.8)
P 		1011.8
(-3)
P 		1213.6
(-1.5)
P 		1257.4
(-1.2)
P 		817
avr 1384.9
(0.9) 		1562
(3) 		1398.2
(1) 		1152.3
(-1.9) 		1246.4
(-0.8) 		1064.8
(-3) 		497
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3984
Sequence Type Exemplar sequence
Representative Public ID C18E9.4 NCBI
Target Description C18E9.4 /REP_DB=WormBase Gene ID /WP=CE05296 /TR=Q18095 /GB=CAA93855.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063506 NCBI Caenorhabditis elegans C18E9.4 (C18E9.4) mRNA, complete cds. 11/11 None
SNAP00000035640 ENSEMBL cdna:SNAP chromosome:CEL140:II:8964253:8964799:-1 11/11 None
GENEFINDER00000035657 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8964253:8964799:-1 11/11 None
C18E9.4 ENSEMBL cdna:known chromosome:CEL140:II:8963763:8964800:-1 gene:C18E9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8964249-8964796(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E9.4
Entrez Gene 174428 Entrez gene
SwissProt Q18095 EMBL-EBI
WormBase CE05296 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93855 Hypothetical protein C18E9.4 [Caenorhabditis elegans] ref|NP_495907.1| C18E9.4 [Caenorhabditis elegans] 1.0E-59
blast CAE59769 Hypothetical protein CBG03221 [Caenorhabditis briggsae] 8.0E-58
blast CAA93855 Hypothetical protein C18E9.4 [Caenorhabditis elegans] ref|NP_495907.1| C18E9.4 [Caenorhabditis elegans] 1.0E-35
blast CAE59769 Hypothetical protein CBG03221 [Caenorhabditis briggsae] 3.0E-35
Sequence
Target Sequence 
>C. ELEGANS:179448_AT
atgggtggaggacatcacgagccgtttaagatcccaaactactcaatctacagcaatttt
cgcgattttccacagttggcgcagcatgaaaaacgactcgctcaaatcggattgaaggat
ccatggatcagaaactacgtctacttgtacgatcgaaagtatccacacgttgttggacaa
tgggctcatttcaagaagttgattcttcctggatggaaagctggagttgcattcacagct
gccttgattttcgttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGTGGAGGACATCACGAGCCGT 247 49 13 Antisense
ATCACGAGCCGTTTAAGATCCCAAA 63 29 26 Antisense
GATCCCAAACTACTCAATCTACAGC 658 415 42 Antisense
ACTCAATCTACAGCAATTTTCGCGA 567 99 53 Antisense
GATTTTCCACAGTTGGCGCAGCATG 660 429 76 Antisense
GAAAAACGACTCGCTCAAATCGGAT 311 351 100 Antisense
GAAACTACGTCTACTTGTACGATCG 515 355 143 Antisense
GATCGAAAGTATCCACACGTTGTTG 564 417 163 Antisense
GTTGTTGGACAATGGGCTCATTTCA 688 437 181 Antisense
AGTTGCATTCACAGCTGCCTTGATT 315 65 237 Antisense
CACAGCTGCCTTGATTTTCGTTGAA 33 195 246 Antisense
Sequence Source Affymetrix Proprietary Database