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[179446_s_at]

Description C48G7.3 /REP_DB=WormBase Gene ID /WP=CE23604 /TR=Q9TVM3 /GB=CAB60587.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 73      6grp_total > 05      4grp_total > 45      6grp_cgc > 03      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 567.3
(3)
P 		485.4
(0.9)
P 		379.1
(-1.7)
P 		329.1
(-3)
P 		238
B 507.8
(2.6)
P 		519.5
(3)
P 		392.4
(-1.8)
P 		360.9
(-3)
P 		159
C 413.5
(3)
P 		349.8
(0)
P 		285.2
(-3)
P 		295.5
(-2.5)
P 		128
avr 496.2
(3) 		451.6
(1.4) 		352.2
(-2.2) 		328.5
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 614.5
(0.6)
P 		740.9
(3)
P 		427.7
(-3)
P 		547.8
(-0.7)
P 		609.1
(0.5)
P 		613.5
(0.6)
P 		313
B 767.9
(3)
P 		593.8
(-0.8)
P 		490.4
(-3)
P 		644.2
(0.3)
P 		562.4
(-1.4)
P 		588.2
(-0.9)
P 		278
C 654.3
(3)
P 		635.2
(2.3)
P 		609.3
(1.4)
P 		591.3
(0.7)
P 		648.5
(2.8)
P 		487.5
(-3)
P 		167
avr 678.9
(3) 		656.6
(2.2) 		509.1
(-3) 		594.4
(0) 		606.7
(0.4) 		563.1
(-1.1) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 206.5
(3)
P 		105.4
(-0.8)
P 		99.1
(-1.1)
P 		48.2
(-3)
P 		158
B 161.9
(3)
P 		128.3
(0.6)
P 		90.9
(-2)
P 		76.9
(-3)
P 		85
C 136.9
(3)
P 		100.6
(0.5)
P 		99.4
(0.4)
P 		49.8
(-3)
P 		87
avr 168.4
(3) 		111.4
(-0.1) 		96.5
(-0.9) 		58.3
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 113.3
(-2.3)
P 		263.5
(3)
P 		93.1
(-3)
P 		138.9
(-1.4)
P 		183.8
(0.2)
P 		149.4
(-1)
P 		170
B 267.2
(3)
P 		197.6
(0.2)
P 		119.1
(-3)
P 		170.6
(-0.9)
P 		228.5
(1.4)
P 		219.3
(1.1)
P 		148
C 242.5
(3)
P 		193.8
(0.6)
P 		155.1
(-1.2)
P 		118.9
(-3)
P 		209.8
(1.4)
P 		163.2
(-0.8)
P 		124
avr 207.7
(2.3) 		218.3
(3) 		122.4
(-3) 		142.8
(-1.7) 		207.4
(2.3) 		177.3
(0.4) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179446_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13769
Sequence Type Exemplar sequence
Representative Public ID C48G7.3 NCBI
Target Description C48G7.3 /REP_DB=WormBase Gene ID /WP=CE23604 /TR=Q9TVM3 /GB=CAB60587.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074249 NCBI Caenorhabditis elegans C48G7.3 (C48G7.3) mRNA, complete cds. 11/11 None
C48G7.3 ENSEMBL cdna:known chromosome:CEL140:V:14786769:14799601:-1 gene:C48G7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14787229-14790312(-) 98.09 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-333
Ensembl C48G7.3
Entrez Gene 3565509 Entrez gene
SwissProt Q9TVM3 EMBL-EBI
WormBase CE23604 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60286 Hypothetical protein C48G7.3 [Caenorhabditis elegans] emb|CAB60587.1| Hypothetical protein C48G7.3 [Caenorhabditis elegans] ref|NP_506650.1| C48G7.3 [Caenorhabditis elegans] 0.0
blast CAE66361 Hypothetical protein CBG11618 [Caenorhabditis briggsae] 0.0
blast XP_394766 PREDICTED: similar to CG33175-PG, isoform G, partial [Apis mellifera] 8.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR003123 EMBL-EBI Vacuolar sorting protein 9 5.7E-63
Pfam IPR000159 EMBL-EBI RA domain 2.7E-19
Sequence
Target Sequence 
>C. ELEGANS:179446_S_AT
tctacattctctcacgtacatctaccgttggatgtgaagttgaagcatggtatatgtggg
aacttctaccccaaccaatcgttactcaaagtgatgcatcatactatcttacatctctct
ggtcagctgtacacgttcttaaaagtactgaatctattcgtcgattgtgtgagaatgatc
aacgtgtcattgtttctcatgattcatcccgtcatctctgttcttcaccacttctctcca
ctgctacattgacacgtggaacatcggctggcattccgcaagtgatttcggcggccacgt
gtgacgcatttgtgaagattgccgtaccggacgaggctgttggatgtgtgagatatgcta
cattcccaggagttccaatgttgactacgtcgaaattgagccgtctcgtcgcgcatcagc
aaggaatcactaatccggaagaacatggattatatctgatcgctgaaggcttcgaatctt
gtctatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACATTCTCTCACGTACATCTAC 22 615 1397 Antisense
TATGTGGGAACTTCTACCCCAACCA 360 651 1449 Antisense
CATCATACTATCTTACATCTCTCTG 540 213 1493 Antisense
CTGGTCAGCTGTACACGTTCTTAAA 148 241 1515 Antisense
CTCTCCACTGCTACATTGACACGTG 506 231 1630 Antisense
TTGACACGTGGAACATCGGCTGGCA 394 703 1645 Antisense
ATCGGCTGGCATTCCGCAAGTGATT 684 33 1659 Antisense
AGATTGCCGTACCGGACGAGGCTGT 390 65 1712 Antisense
ACGTCGAAATTGAGCCGTCTCGTCG 668 35 1783 Antisense
TCTCGTCGCGCATCAGCAAGGAATC 30 609 1800 Antisense
GAAGGCTTCGAATCTTGTCTATCTC 648 333 1861 Antisense
Sequence Source Affymetrix Proprietary Database