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[179445_at]

Description F47B8.7 /REP_DB=WormBase Gene ID /WP=CE10644 /TR=Q20522 /GB=CAB01197.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 23      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 96.5
(3)
P 		5.4
(-3)
A 		28.8
(-1.5)
A 		58.2
(0.5)
A 		91
B 105.3
(3)
P 		31.3
(-1.8)
A 		12.1
(-3)
A 		80.6
(1.4)
M 		93
C 78.2
(1.1)
A 		35.6
(-1.9)
A 		20.1
(-3)
A 		105
(3)
P 		85
avr 93.3
(3) 		24.1
(-2.7) 		20.3
(-3) 		81.3
(2) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 70.5
(3)
A 		25.7
(-2.8)
A 		44.2
(-0.4)
A 		24
(-3)
A 		30.2
(-2.2)
A 		45.1
(-0.3)
A 		47
B 24.2
(-0.6)
A 		53
(3)
A 		16.3
(-1.6)
A 		5.6
(-3)
A 		28.3
(-0.1)
A 		34.5
(0.7)
A 		47
C 42.8
(3)
A 		40.3
(2.6)
A 		12.2
(-1.6)
A 		3.1
(-3)
A 		23
(0)
A 		6.5
(-2.5)
A 		40
avr 45.8
(3) 		39.7
(2) 		24.2
(-0.7) 		10.9
(-3) 		27.2
(-0.2) 		28.7
(0.1) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 35.1
(3)
P 		1.2
(-3)
A 		7.5
(-1.9)
A 		8.5
(-1.7)
A 		34
B 33.6
(3)
P 		7.7
(-2)
A 		2.8
(-3)
A 		17.2
(-0.2)
M 		31
C 25.9
(3)
A 		10.2
(-2)
A 		7
(-3)
A 		17.7
(0.4)
P 		19
avr 31.5
(3) 		6.4
(-2.9) 		5.8
(-3) 		14.5
(-1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 13
(3)
A 		9.2
(-0.3)
A 		9.6
(0)
A 		6.1
(-3)
A 		9.1
(-0.4)
A 		11
(1.3)
A 		7
B 8.4
(-0.4)
A 		17.6
(3)
A 		4
(-2.1)
A 		1.5
(-3)
A 		11.5
(0.7)
A 		12.9
(1.2)
A 		16
C 15.9
(3)
A 		12.3
(1.6)
A 		3.1
(-2)
A 		0.6
(-3)
A 		7.4
(-0.3)
A 		2.2
(-2.4)
A 		15
avr 12.4
(2.7) 		13
(3) 		5.6
(-1.3) 		2.7
(-3) 		9.3
(0.8) 		8.7
(0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13930
Sequence Type Exemplar sequence
Representative Public ID F47B8.7 NCBI
Target Description F47B8.7 /REP_DB=WormBase Gene ID /WP=CE10644 /TR=Q20522 /GB=CAB01197.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074153 NCBI Caenorhabditis elegans Serpentine Receptor, class M family member (srm-4) (srm-4) mRNA, complete cds. 11/11 None
GENEFINDER00000011453 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14334331:14337264:1 11/11 None
F47B8.7 ENSEMBL cdna:known chromosome:CEL140:V:14336004:14337264:1 gene:F47B8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011442 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14336003-14337264(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srm-4
Ensembl F47B8.7
Entrez Gene 185899 Entrez gene
SwissProt Q20522 EMBL-EBI
WormBase CE10644 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01197 Hypothetical protein F47B8.7 [Caenorhabditis elegans] ref|NP_506554.1| Serpentine Receptor, class M family member (srm-4) [Caenorhabditis elegans] 0.0
blast CAI70418 Hypothetical protein F47B8.12 [Caenorhabditis elegans] ref|NP_001023942.1| Serpentine Receptor, class M family member (srm-5) [Caenorhabditis elegans] 1.0E-125
blast CAE60918 Hypothetical protein CBG04635 [Caenorhabditis briggsae] 1.0E-125
blast CAE60918 Hypothetical protein CBG04635 [Caenorhabditis briggsae] 1.0E-124
blast CAI70418 Hypothetical protein F47B8.12 [Caenorhabditis elegans] ref|NP_001023942.1| Serpentine Receptor, class M family member (srm-5) [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.7E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506554.1 7 34-51,71-90,115-137,157-179,225-247,268-290,305-327
F47B8.7 7 34-51,71-90,115-137,157-179,225-247,268-290,305-327
GENEFINDER00000011453 7 297-319,339-358,383-405,425-447,493-515,536-558,573-595
Sequence
Target Sequence 
>C. ELEGANS:179445_AT
aatttttcaagttctcacatcagtgagcctttgcttttcgtctttcccaactagtaagga
cataaccgagcttcaatttgttgccaataagtttactggttcaaactctgcatttcttct
tttatcatatacgaaagaagtggatactgtcagggaacagattgaacacgtcggatcaat
aatgtctgcggttgcttacgtattaactttaatcttgtcaattttggtcatgattttgtg
cacgataaaaatcaatttaaaagttcgagaatcaaaaaactcaagtaacaatttattggt
actgcagaagaagatgaatcgagttttattggcacagttcttctgtccattaatattcat
tcaagctccattctactattcagtccttggtccgatagttggactttcccaaggccttgt
tacagaccttctccctctcctttttgcctggtcacctgttgtaaacacccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTTTCAAGTTCTCACATCAGTG 215 175 495 Antisense
ATCAGTGAGCCTTTGCTTTTCGTCT 149 23 513 Antisense
AACCGAGCTTCAATTTGTTGCCAAT 312 147 558 Antisense
ACTGGTTCAAACTCTGCATTTCTTC 23 97 589 Antisense
ACTCTGCATTTCTTCTTTTATCATA 57 101 599 Antisense
TAATGTCTGCGGTTGCTTACGTATT 702 635 674 Antisense
ATTGGCACAGTTCTTCTGTCCATTA 609 3 822 Antisense
ATTCAGTCCTTGGTCCGATAGTTGG 473 9 872 Antisense
GATAGTTGGACTTTCCCAAGGCCTT 270 423 888 Antisense
CAAGGCCTTGTTACAGACCTTCTCC 198 181 904 Antisense
TGGTCACCTGTTGTAAACACCCTTT 220 509 943 Antisense
Sequence Source Affymetrix Proprietary Database