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[179444_s_at]

Description F11E6.7 /REP_DB=WormBase Gene ID /WP=CE19787 /TR=Q9XVR0 /GB=CAB02920.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 93      6grp_total > 78      4grp_total > 53      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 222.6
(0.1)
P 		258.7
(3)
P 		202.5
(-1.5)
P 		183.7
(-3)
P 		75
B 283.1
(3)
P 		237.1
(1.1)
P 		211.2
(0)
P 		137.8
(-3)
P 		145
C 367.7
(3)
P 		212.1
(-1.1)
P 		191.7
(-1.6)
P 		140.1
(-3)
P 		228
avr 291.1
(3) 		236
(0.6) 		201.8
(-0.9) 		153.9
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 655
1 2 3 4 5 6 range
A 272.5
(-2)
P 		211.4
(-2.6)
P 		162.7
(-3)
P 		263.5
(-2.1)
P 		393.2
(-0.9)
P 		816.5
(3)
P 		654
B 306.1
(-1.4)
P 		213.3
(-2.4)
P 		161.2
(-3)
P 		292.2
(-1.6)
P 		418.8
(-0.2)
P 		707.2
(3)
P 		546
C 226.3
(-2.5)
P 		266.9
(-2.1)
P 		180.7
(-3)
P 		181.8
(-3)
P 		449.2
(-0.2)
P 		765.8
(3)
P 		585
avr 268.3
(-2) 		230.5
(-2.4) 		168.2
(-3) 		245.8
(-2.2) 		420.4
(-0.5) 		763.2
(3) 		595
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 81
(3)
P 		56.2
(0.2)
P 		52.9
(-0.1)
P 		26.9
(-3)
P 		54
B 90.3
(3)
P 		58.6
(-0.1)
P 		48.9
(-1.1)
P 		29.4
(-3)
P 		61
C 121.7
(3)
P 		61
(-0.7)
P 		66.8
(-0.4)
P 		23.6
(-3)
P 		98
avr 97.7
(3) 		58.6
(-0.3) 		56.2
(-0.5) 		26.6
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 50.2
(-2.5)
P 		75.2
(-1.5)
P 		35.4
(-3)
P 		66.8
(-1.8)
P 		118.6
(0.1)
P 		198.8
(3)
P 		163
B 106.5
(-1.2)
P 		71
(-2.1)
P 		39.1
(-3)
P 		77.4
(-2)
P 		170.1
(0.5)
P 		263.7
(3)
P 		225
C 83.9
(-1.7)
P 		81.4
(-1.8)
P 		46
(-2.7)
P 		36.6
(-3)
P 		145.3
(-0)
P 		256.4
(3)
P 		220
avr 80.2
(-1.8) 		75.9
(-1.9) 		40.2
(-3) 		60.3
(-2.4) 		144.7
(0.1) 		239.6
(3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179444_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8921
Sequence Type Exemplar sequence
Representative Public ID F11E6.7 NCBI
Target Description F11E6.7 /REP_DB=WormBase Gene ID /WP=CE19787 /TR=Q9XVR0 /GB=CAB02920.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070711 NCBI Caenorhabditis elegans F11E6.7 (F11E6.7) mRNA, complete cds. 11/11 None
SNAP00000042532 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17457931:17461225:-1 11/11 None
GENEFINDER00000042540 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17457931:17461225:-1 11/11 None
F11E6.7 ENSEMBL cdna:known chromosome:CEL140:IV:17457789:17461234:-1 gene:F11E6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17457936-17461231(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11E6.7
Entrez Gene 178531 Entrez gene
SwissProt Q9XVR0 EMBL-EBI
WormBase CE19787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02920 Hypothetical protein F11E6.7 [Caenorhabditis elegans] ref|NP_503112.1| F11E6.7 [Caenorhabditis elegans] 0.0
blast CAA92167 Hypothetical protein F19H6.3 [Caenorhabditis elegans] ref|NP_510078.1| F19H6.3 [Caenorhabditis elegans] 0.0
blast CAE57476 Hypothetical protein CBG00443 [Caenorhabditis briggsae] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:179444_S_AT
cacaaccagcactaaacgtccaaaagactcctgaagcatcgcaatctccagcaagtccga
tttcttcaaatactggatcatctactttcactgtcgatcccactcctgttcaaaaagacc
tgtccgttgttctctctcgcaaaaatttggcgccaatattttgtggtgggctgaaaaatt
tcaaaaaggaacaactgtgtccacaaaaacaatgtgaaaaggcgaaggatgcggagaagt
ctttcgtagaagatggacgcgttttgcatagaatctgtgtcagtctatcaaacgctcaca
cacaaaatcattggccaagtgaaaattcgtccaaacttctgtccaacatcaacaaggctt
caatacttttcaagaatctggtacaaacacgcggcgccggcgattgggatgacacggatt
tagaaaatgatgatttgtcaactgccgaaagtgatgtggcaactgacgttgatgttcttg
tagcagtttacaaacgattttcacgccatcacacgtcacccatggctaataatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAACCAGCACTAAACGTCCAAAA 111 195 2420 Antisense
AAAAGACTCCTGAAGCATCGCAATC 548 131 2441 Antisense
TCTCCAGCAAGTCCGATTTCTTCAA 183 611 2464 Antisense
TACTGGATCATCTACTTTCACTGTC 516 647 2490 Antisense
GATCCCACTCCTGTTCAAAAAGACC 455 411 2515 Antisense
CAAAAAGACCTGTCCGTTGTTCTCT 300 191 2530 Antisense
TCTGTGTCAGTCTATCAAACGCTCA 367 607 2693 Antisense
GAAAATTCGTCCAAACTTCTGTCCA 380 353 2740 Antisense
GCGCCGGCGATTGGGATGACACGGA 380 287 2813 Antisense
TACAAACGATTTTCACGCCATCACA 80 643 2908 Antisense
CACACGTCACCCATGGCTAATAATC 81 193 2929 Antisense
Sequence Source Affymetrix Proprietary Database