[Home] | [Total List]

[179441_at]

Description F58H1.4 /REP_DB=WormBase Gene ID /WP=CE06028 /TR=Q21013 /GB=CAB00107.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 71      6grp_total > 42      4grp_total > 15      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 272.1
(3)
P 		115.5
(-3)
P 		165.3
(-1.1)
P 		249.2
(2.1)
P 		157
B 303.3
(3)
P 		198.3
(-2.6)
P 		190.3
(-3)
P 		287.2
(2.1)
P 		113
C 258
(3)
P 		196.8
(-3)
P 		217.8
(-0.9)
P 		237
(0.9)
P 		61
avr 277.8
(3) 		170.2
(-3) 		191.1
(-1.8) 		257.8
(1.9) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 557
1 2 3 4 5 6 range
A 147.4
(-2.5)
P 		295.5
(1.3)
P 		360.7
(3)
P 		205.6
(-1)
P 		237.6
(-0.2)
P 		129
(-3)
P 		232
B 350.4
(-1.2)
P 		398.8
(-0.6)
P 		686.4
(3)
P 		267.6
(-2.2)
P 		254.5
(-2.4)
P 		205.6
(-3)
P 		481
C 257.4
(-0)
P 		326.7
(3)
P 		244.3
(-0.6)
P 		286.8
(1.2)
P 		190.2
(-3)
P 		251.3
(-0.3)
P 		137
avr 251.7
(-1.6) 		340.3
(0.7) 		430.5
(3) 		253.3
(-1.5) 		227.4
(-2.2) 		195.3
(-3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 99.1
(3)
P 		25.1
(-3)
P 		43.2
(-1.5)
P 		36.5
(-2.1)
P 		74
B 96.7
(3)
P 		49
(-2.4)
P 		44.1
(-3)
P 		61.2
(-1)
P 		53
C 85.4
(3)
P 		56.6
(-0.8)
P 		75.9
(1.7)
P 		40
(-3)
P 		45
avr 93.7
(3) 		43.6
(-3) 		54.4
(-1.7) 		45.9
(-2.7) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 27.2
(-3)
P 		105.1
(3)
P 		78.6
(1)
P 		52.2
(-1.1)
P 		71.7
(0.4)
P 		31.4
(-2.7)
P 		78
B 121.9
(0.2)
P 		132.7
(0.9)
P 		166.7
(3)
P 		70.9
(-3)
P 		103.4
(-1)
P 		76.7
(-2.6)
P 		96
C 95.4
(2.4)
P 		99.7
(3)
P 		62.2
(-2.4)
P 		57.7
(-3)
P 		61.6
(-2.4)
P 		84.1
(0.8)
P 		42
avr 81.5
(-0.6) 		112.5
(3) 		102.5
(1.9) 		60.3
(-3) 		78.9
(-0.9) 		64.1
(-2.6) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179441_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14682
Sequence Type Exemplar sequence
Representative Public ID F58H1.4 NCBI
Target Description F58H1.4 /REP_DB=WormBase Gene ID /WP=CE06028 /TR=Q21013 /GB=CAB00107.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073597 NCBI Caenorhabditis elegans F58H1.4 (F58H1.4) mRNA, complete cds. 11/11 None
GENEFINDER00000006516 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11939574:11940376:-1 10/11 None
F58H1.4 ENSEMBL cdna:known chromosome:CEL140:V:11939574:11940373:-1 gene:F58H1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11939573-11940373(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58H1.4
Entrez Gene 186548 Entrez gene
SwissProt Q21013 EMBL-EBI
WormBase CE06028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE75355 Hypothetical protein CBG23335 [Caenorhabditis briggsae] 7.0E-58
blast CAB00107 Hypothetical protein F58H1.4 [Caenorhabditis elegans] ref|NP_505998.1| F58H1.4 [Caenorhabditis elegans] 4.0E-57
blast CAB00107 Hypothetical protein F58H1.4 [Caenorhabditis elegans] ref|NP_505998.1| F58H1.4 [Caenorhabditis elegans] 2.0E-53
blast CAE75355 Hypothetical protein CBG23335 [Caenorhabditis briggsae] 3.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006516 1 12-33
Sequence
Target Sequence 
>C. ELEGANS:179441_AT
atgggctccaaagcacgagcacgacgacgtttaagttgttttttaagcgtttttgttgtg
acatgcttattacagtactgcacagcaggtgttactaagaataatagttgcaaaaaagtt
ggagtggaggaacttatagatgaagaaggctgtgatttgatgataattcgaatcaatcga
tgcatgcatgcgaagtgctgccggatggttgaatgggaaatgcttgaaacagaattaaaa
tgttccaaaggaaaccgaaatcttcgaataccatctgcaacacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCTCCAAAGCACGAGCACGAC 165 49 13 Antisense
GCACGAGCACGACGACGTTTAAGTT 672 309 25 Antisense
GCGTTTTTGTTGTGACATGCTTATT 676 289 59 Antisense
CATGCTTATTACAGTACTGCACAGC 380 211 74 Antisense
ACTGCACAGCAGGTGTTACTAAGAA 93 99 89 Antisense
TGAAGAAGGCTGTGATTTGATGATA 280 571 153 Antisense
TCGAATCAATCGATGCATGCATGCG 343 601 180 Antisense
GCATGCATGCGAAGTGCTGCCGGAT 637 309 194 Antisense
AGTGCTGCCGGATGGTTGAATGGGA 385 59 206 Antisense
CCGAAATCTTCGAATACCATCTGCA 591 261 267 Antisense
TCTTCGAATACCATCTGCAACACAA 621 617 273 Antisense
Sequence Source Affymetrix Proprietary Database