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[179440_at]

Description T08G3.9 /REP_DB=WormBase Gene ID /WP=CE18940 /TR=Q9XU49 /GB=CAB05798.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 02      6grp_cgc > 55      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 8.7
(-2.9)
A 		6.9
(-3)
A 		18.6
(-2.2)
A 		98.1
(3)
A 		91
B 9.9
(-2.5)
A 		15.1
(-1.3)
A 		7.8
(-3)
A 		33.7
(3)
A 		26
C 2.8
(-2.9)
A 		1.9
(-3)
A 		2
(-3)
A 		109.2
(3)
A 		107
avr 7.1
(-3) 		8
(-2.9) 		9.5
(-2.8) 		80.3
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 3.3
(-3)
A 		12.5
(-1.6)
A 		43.4
(3)
A 		8.6
(-2.2)
A 		3.2
(-3)
A 		3.6
(-2.9)
A 		40
B 5.8
(-2.7)
A 		24.3
(3)
A 		9.4
(-1.6)
A 		4.8
(-3)
A 		5.7
(-2.7)
A 		15.8
(0.4)
A 		20
C 11
(-2.3)
A 		41.4
(3)
A 		11.9
(-2.2)
A 		7.3
(-3)
A 		8.7
(-2.8)
A 		32.7
(1.5)
A 		34
avr 6.7
(-2.8) 		26.1
(3) 		21.6
(1.7) 		6.9
(-2.7) 		5.9
(-3) 		17.4
(0.4) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.2
(-2.2)
A 		1.5
(-3)
A 		4.9
(-1.4)
A 		14.4
(3)
A 		13
B 3.2
(-1.4)
A 		3.7
(-0.9)
A 		1.8
(-3)
A 		7.2
(3)
A 		5
C 0.9
(-2.9)
A 		0.6
(-3)
A 		0.7
(-3)
A 		18.4
(3)
A 		18
avr 2.4
(-2.7) 		1.9
(-3) 		2.5
(-2.7) 		13.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.6
(-3)
A 		4.5
(-0.3)
A 		9.4
(3)
A 		2.2
(-1.9)
A 		1
(-2.7)
A 		0.9
(-2.8)
A 		9
B 2
(-2.4)
A 		8.1
(3)
A 		2.3
(-2.1)
A 		1.3
(-3)
A 		2.3
(-2.1)
A 		5.9
(1.1)
A 		7
C 4.1
(-1.6)
A 		12.6
(3)
A 		3
(-2.2)
A 		1.5
(-3)
A 		2.8
(-2.3)
A 		10.9
(2.1)
A 		11
avr 2.2
(-2.6) 		8.4
(3) 		4.9
(-0.1) 		1.7
(-3) 		2
(-2.7) 		5.9
(0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179440_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14052
Sequence Type Exemplar sequence
Representative Public ID T08G3.9 NCBI
Target Description T08G3.9 /REP_DB=WormBase Gene ID /WP=CE18940 /TR=Q9XU49 /GB=CAB05798.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T08G3.9 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16478259:16479407:1 gene:T08G3.9 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031141 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16478258-16479407(+) 100.0 100.0
Public Domain and Genome References
Ensembl T08G3.9
Sequence
Target Sequence 
>C. ELEGANS:179440_AT
ggagcactttcagcaacatgggtatactttctaaattctctcgttcaaatttgcatggct
tgcaatcgattttactttttatttttcccatttggaattaaagtattacgaccattgaat
ataactaaatactctatacttctttcattttttatttcaatttgttttgtcgcaatgact
tttccgaagggatgtggttatgtgtacgacccaaattattttagctggagaggagaagat
gatccatgttctgaaagaatgacaatgatcatgccaccagtcaacttcttaattacaata
ataacaaatggttttaacattggcacagcaatacgtttattaacaatgaaaaacgttagt
agtagcgattgtctacaattaattgacacgtttaattccttttacatttacaaactcaat
gactctatttggtttcaattcgtatgtctaacattatcccttgtgactatatgtgctcta
gatggtcttgttatgcttatttgcaatcacgactgccatccgagctggttaacgcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCACTTTCAGCAACATGGGTAT 570 519 184 Antisense
ATACTTTCTAAATTCTCTCGTTCAA 672 23 207 Antisense
GCATGGCTTGCAATCGATTTTACTT 399 311 236 Antisense
GTTTTGTCGCAATGACTTTTCCGAA 515 447 347 Antisense
AATGATCATGCCACCAGTCAACTTC 611 163 447 Antisense
TGACACGTTTAATTCCTTTTACATT 340 571 567 Antisense
GTATGTCTAACATTATCCCTTGTGA 47 457 625 Antisense
ATCCCTTGTGACTATATGTGCTCTA 135 39 639 Antisense
AGATGGTCTTGTTATGCTTATTTGC 252 67 663 Antisense
TATTTGCAATCACGACTGCCATCCG 166 663 681 Antisense
TGCCATCCGAGCTGGTTAACGCGTA 602 585 697 Antisense
Sequence Source Affymetrix Proprietary Database