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[179439_s_at]

Description F11E6.3 /REP_DB=WormBase Gene ID /WP=CE19783 /TR=Q9U3J8 /GB=CAB62800.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 51      6grp_highest_nonorm > 17      6grp_total > 62      4grp_total > 58      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14654
1 2 3 4 range
A 5364.3
(-0.8)
P 		14533.5
(3)
P 		13800.3
(2.7)
P 		47.2
(-3)
A 		14486
B 5150.1
(-0.9)
P 		13770.2
(2.6)
P 		14676.9
(3)
P 		23.1
(-3)
A 		14654
C 5270.7
(-0.7)
P 		13554.3
(3)
P 		11893
(2.3)
P 		32.4
(-3)
A 		13522
avr 5261.7
(-0.7) 		13952.7
(3) 		13456.7
(2.8) 		34.2
(-3) 		13919

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15742
1 2 3 4 5 6 range
A 7359
(-1)
P 		12281
(1.5)
P 		15087.8
(3)
P 		12174.2
(1.5)
P 		11595.4
(1.2)
P 		3483.3
(-3)
P 		11605
B 7423.9
(-1.3)
P 		12385.4
(0.7)
P 		18123.9
(3)
P 		12500.8
(0.7)
P 		10268.3
(-0.2)
P 		3260.2
(-3)
P 		14864
C 7566.7
(-0.6)
P 		12297.5
(1.5)
P 		15503.2
(3)
P 		13048.9
(1.9)
P 		13125.1
(1.9)
P 		2381.7
(-3)
P 		13122
avr 7449.9
(-1) 		12321.3
(1.2) 		16238.3
(3) 		12574.6
(1.3) 		11662.9
(0.9) 		3041.7
(-3) 		13197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4140
1 2 3 4 range
A 1953.2
(0.2)
P 		3154.8
(2.2)
P 		3607.7
(3)
P 		6.9
(-3)
A 		3601
B 1642.3
(-0.1)
P 		3400.9
(3)
P 		3401
(3)
P 		4.9
(-3)
A 		3396
C 1744.7
(-0.5)
P 		3896.9
(2.6)
P 		4145.1
(3)
P 		5.5
(-3)
A 		4140
avr 1780.1
(-0.1) 		3484.2
(2.6) 		3717.9
(3) 		5.8
(-3) 		3712

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3604
1 2 3 4 5 6 range
A 1356.6
(-2.1)
P 		4367.7
(3)
P 		3285.8
(1.2)
P 		3087.7
(0.8)
P 		3499
(1.5)
P 		848.1
(-3)
P 		3520
B 2583.2
(-0.4)
P 		4122.6
(2.5)
P 		4401
(3)
P 		3311
(0.9)
P 		4171.9
(2.6)
P 		1215.7
(-3)
P 		3185
C 2804.6
(0.5)
P 		3752.3
(2.1)
P 		3945.8
(2.5)
P 		2624.2
(0.2)
P 		4247.1
(3)
P 		797.3
(-3)
P 		3450
avr 2248.1
(-0.5) 		4080.9
(3) 		3877.5
(2.6) 		3007.6
(0.9) 		3972.7
(2.8) 		953.7
(-3) 		3127
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179439_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10101
Sequence Type Exemplar sequence
Representative Public ID F11E6.3 NCBI
Target Description F11E6.3 /REP_DB=WormBase Gene ID /WP=CE19783 /TR=Q9U3J8 /GB=CAB62800.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070715 NCBI Caenorhabditis elegans F11E6.3 (F11E6.3) mRNA, complete cds. 11/11 None
SNAP00000042536 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17470624:17471869:-1 11/11 None
GENEFINDER00000042543 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17470624:17471869:-1 11/11 None
F11E6.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:17470465:17472267:-1 gene:F11E6.3 11/11 None
F11E6.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:17470465:17471875:-1 gene:F11E6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17470629-17471875(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11E6.3
Entrez Gene 178533 Entrez gene
SwissProt Q9U3J8 EMBL-EBI
WormBase CE19783 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB62800 Hypothetical protein F11E6.3 [Caenorhabditis elegans] ref|NP_503116.1| F11E6.3 [Caenorhabditis elegans] 2.0E-33
blast CAB62800 Hypothetical protein F11E6.3 [Caenorhabditis elegans] ref|NP_503116.1| F11E6.3 [Caenorhabditis elegans] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:179439_S_AT
ctccagctgttgaagagtctgcccccgctgccgaacaaccagttgagcaagctgctgagc
cagttgcccaagaagaggctgccccagaggccccagctcaagacgccggatacagatcta
aaagacaagcccaaaactcttacggagatgaagccgctgctgctccagctgttgaagagt
ctgcccccgctgccgaacaaccagtagagcaagccgccgagccagttgctcaagaagagg
ccgccccagaggccccagctcaagacgccggatacagatctaagagacaagcccaaaact
cttatggagatgaagccgctgctgctccagctgttgaagagtctgcccccgctgccgaac
aaccagtagagcaagccgccgagccagttgcccaagaagaggctgtcccagaggccccag
ctcaagacgctggatacagatctaagagacaagcccaaaactcctatggagatgaagccg
ccgctgctccagctgctgaagagtctgccccagctgccgaacaaccagtagagcaagctg
ccgagccagttgctcaggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAGCTGTTGAAGAGTCTGCCCC 602 235 443 Antisense
TGAGCAAGCTGCTGAGCCAGTTGCC 466 569 486 Antisense
GCCCAAGAAGAGGCTGCCCCAGAGG 151 287 508 Antisense
GACAAGCCCAAAACTCTTACGGAGA 59 365 566 Antisense
TCCAGCTGTTGAAGAGTCTGCCCCC 630 589 606 Antisense
CCAGCTCAAGACGCCGGATACAGAT 506 273 697 Antisense
GCTCCAGCTGTTGAAGAGTCTGCCC 630 297 766 Antisense
AACAACCAGTAGAGCAAGCCGCCGA 432 135 800 Antisense
ACTCCTATGGAGATGAAGCCGCCGC 347 99 902 Antisense
CCCAGCTGCCGAACAACCAGTAGAG 677 257 951 Antisense
GCTGCCGAGCCAGTTGCTCAGGAAG 22 299 979 Antisense
Sequence Source Affymetrix Proprietary Database