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[179438_at]

Description ZK662.5 /REP_DB=WormBase Gene ID /WP=CE24733 /TR=Q9U1N7 /GB=CAB60456.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 14.1
(-1.9)
A 		19.7
(3)
A 		17.5
(1.1)
A 		12.9
(-3)
A 		7
B 11
(-1.6)
A 		19.3
(3)
A 		17.5
(2)
A 		8.5
(-3)
A 		11
C 10.3
(-2.4)
A 		17.1
(3)
A 		9.6
(-3)
A 		12.2
(-0.9)
A 		8
avr 11.8
(-2.5) 		18.7
(3) 		14.9
(-0) 		11.2
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.4
(-1.9)
A 		8.3
(-1.1)
A 		6.1
(-3)
A 		10.8
(1.1)
A 		12.9
(3)
A 		10.6
(1)
A 		7
B 13.4
(0.2)
A 		14.1
(0.7)
A 		10
(-2.1)
A 		17.6
(3)
A 		15.6
(1.7)
A 		8.6
(-3)
A 		9
C 8.5
(-2.6)
A 		18.6
(2.6)
A 		15
(0.7)
A 		19.4
(3)
A 		7.8
(-3)
A 		8.9
(-2.4)
A 		12
avr 9.8
(-2.6) 		13.7
(1) 		10.4
(-2.1) 		15.9
(3) 		12.1
(-0.5) 		9.4
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 5.1
(3)
A 		4.3
(1.5)
A 		4.6
(2.1)
A 		1.9
(-3)
A 		3
B 3.5
(0.4)
A 		4.8
(3)
A 		4.1
(1.6)
A 		1.8
(-3)
A 		3
C 3.4
(-0.2)
A 		4.9
(3)
A 		3.3
(-0.4)
A 		2.1
(-3)
A 		3
avr 4
(1.5) 		4.7
(3) 		4
(1.5) 		1.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.4
(-2.8)
A 		3
(0.9)
A 		1.3
(-3)
A 		2.7
(0.2)
A 		3.9
(3)
A 		2.6
(0)
A 		3
B 4.7
(0.5)
A 		4.7
(0.5)
A 		2.4
(-3)
A 		4.7
(0.5)
A 		6.4
(3)
A 		3.2
(-1.8)
A 		4
C 3.1
(-1.9)
A 		5.7
(3)
A 		3.8
(-0.6)
A 		3.9
(-0.4)
A 		2.5
(-3)
A 		3
(-2.1)
A 		3
avr 3.1
(-1.2) 		4.5
(3) 		2.5
(-3) 		3.8
(0.9) 		4.3
(2.4) 		2.9
(-1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179438_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17965
Sequence Type Exemplar sequence
Representative Public ID ZK662.5 NCBI
Target Description ZK662.5 /REP_DB=WormBase Gene ID /WP=CE24733 /TR=Q9U1N7 /GB=CAB60456.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078185 NCBI Caenorhabditis elegans ZK662.5 (ZK662.5) mRNA, complete cds. 11/11 None
SNAP00000025417 ENSEMBL cdna:SNAP chromosome:CEL140:X:15721578:15723694:1 9/11 None
ZK662.5 ENSEMBL cdna:known chromosome:CEL140:X:15721188:15723694:1 gene:ZK662.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025419 2/11 Cross Hyb Matching Probes None
GENEFINDER00000025424 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15721187-15723694(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK662.5
Entrez Gene 191378 Entrez gene
SwissProt Q9U1N7 EMBL-EBI
WormBase CE24733 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60456 Hypothetical protein ZK662.5 [Caenorhabditis elegans] ref|NP_510586.1| ZK662.5 [Caenorhabditis elegans] 0.0
blast CAB01908 Hypothetical protein ZK662.4 [Caenorhabditis elegans] emb|CAB01901.1| Hypothetical protein ZK662.4 [Caenorhabditis elegans] ref|NP_510587.1| abnormal cell LINeage family member (lin-15B) [Caenorhabditis elegans] emb|CAA82854.1| lin-15B [Caenorhabditis elegans] gb|AAA20089.1| lin-15B protein gb|AAA20088.1| lin-15B protein 0.0
blast CAE68017 Hypothetical protein CBG13631 [Caenorhabditis briggsae] 1.0E-138
blast CAE68017 Hypothetical protein CBG13631 [Caenorhabditis briggsae] 1.0E-137
Sequence
Target Sequence 
>C. ELEGANS:179438_AT
agaatttcagctccgatacgaccttgccactttcttggatccccattacgcctattgcga
tagtattcatacccaagagatgtggagaacgcttgagaacacggtcgccttagaacttga
tgtttccgctttgagctacgaagagcgcttagaagctatgaagacggaacttgctcatta
tcgtcaaattttaactgttgagcgacctgaaaaacatgagaactcgaatcactggtgggg
cactcgccagacggatatgaaattcttggcagtcatcgcccgtgaacacttggtcagtcc
tgcagtttctttagatgccgacttctatctggggaacggtgctaaattccaacacatctg
caagacctcctcgtctcgacgtctggagaattgcttggaactcgcaggaatctatcaaac
attccgtggaaaaggattatctgaggatatcatttctcaatcaatgattaaaacgttgaa
taaaacggcaagtcgcctaccacgacaatttcagttcggtcagaaggtagagccagatca
acaagaaattggcactcagcactttcctccgatgcatgtagctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATTTCAGCTCCGATACGACCTT 56 73 1185 Antisense
GATCCCCATTACGCCTATTGCGATA 174 417 1222 Antisense
AACACGGTCGCCTTAGAACTTGATG 510 135 1282 Antisense
GAACTTGATGTTTCCGCTTTGAGCT 267 351 1297 Antisense
TGAAATTCTTGGCAGTCATCGCCCG 190 573 1442 Antisense
AACACTTGGTCAGTCCTGCAGTTTC 112 135 1469 Antisense
AGATGCCGACTTCTATCTGGGGAAC 637 63 1497 Antisense
CTCCTCGTCTCGACGTCTGGAGAAT 361 235 1551 Antisense
TAAAACGGCAAGTCGCCTACCACGA 473 637 1665 Antisense
AGAAATTGGCACTCAGCACTTTCCT 158 73 1728 Antisense
CTTTCCTCCGATGCATGTAGCTGCA 350 223 1746 Antisense
Sequence Source Affymetrix Proprietary Database