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[179437_s_at]

Description W02A2.3 /REP_DB=WormBase Gene ID /WP=CE21233 /TR=Q9XUB6 /GB=CAB05306.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 87      6grp_total > 0      4grp_total > 50      6grp_total_sub > Hat      6grp_cgc > 64      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2744
1 2 3 4 range
A 521.1
(-2.1)
P 		2518.9
(2.6)
P 		2667.4
(3)
P 		163
(-3)
P 		2504
B 473.9
(-2.2)
P 		2814.7
(3)
P 		2342.3
(1.9)
P 		133.8
(-3)
P 		2681
C 455
(-2.4)
P 		2877.9
(3)
P 		2255.3
(1.6)
P 		174
(-3)
P 		2704
avr 483.3
(-2.2) 		2737.2
(3) 		2421.7
(2.3) 		156.9
(-3) 		2580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 981
1 2 3 4 5 6 range
A 1000.1
(-1.4)
P 		1726
(3)
P 		745.3
(-3)
P 		1066.6
(-1)
P 		1356.7
(0.7)
P 		1625.8
(2.4)
P 		981
B 955.4
(-3)
P 		1604.5
(3)
P 		1003.8
(-2.6)
P 		1093.4
(-1.7)
P 		1307.7
(0.3)
P 		1089
(-1.8)
P 		649
C 970.8
(-2.2)
P 		1578.8
(2.2)
P 		1125.1
(-1.1)
P 		856.4
(-3)
P 		1686.2
(3)
P 		956.4
(-2.3)
P 		830
avr 975.4
(-2.8) 		1636.4
(3) 		958.1
(-3) 		1005.5
(-2.6) 		1450.2
(1.4) 		1223.7
(-0.7) 		678
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 804
1 2 3 4 range
A 189.7
(-1.5)
P 		546.8
(1.7)
P 		697.3
(3)
P 		23.9
(-3)
P 		673
B 151.1
(-1.9)
P 		695.2
(3)
P 		542.8
(1.6)
P 		28.5
(-3)
P 		667
C 150.6
(-2.1)
P 		827.4
(3)
P 		786
(2.7)
P 		29.3
(-3)
P 		798
avr 163.8
(-1.8) 		689.8
(3) 		675.4
(2.9) 		27.2
(-3) 		663

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 184.4
(-2.7)
P 		613.9
(3)
P 		162.3
(-3)
P 		270.5
(-1.6)
P 		409.4
(0.3)
P 		395.8
(0.1)
P 		452
B 332.4
(-1.2)
P 		534.1
(3)
P 		243.7
(-3)
P 		289.6
(-2.1)
P 		531.3
(2.9)
P 		406.1
(0.4)
P 		290
C 359.8
(0)
P 		481.7
(2)
P 		286.4
(-1.2)
P 		172.2
(-3)
P 		545.6
(3)
P 		320.2
(-0.6)
P 		373
avr 292.2
(-1.8) 		543.2
(3) 		230.8
(-3) 		244.1
(-2.7) 		495.4
(2.1) 		374
(-0.2) 		312
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179437_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10051
Sequence Type Exemplar sequence
Representative Public ID W02A2.3 NCBI
Target Description W02A2.3 /REP_DB=WormBase Gene ID /WP=CE21233 /TR=Q9XUB6 /GB=CAB05306.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070161 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-74) (pqn-74) mRNA, complete cds. 11/11 None
SNAP00000017634 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13329941:13331342:-1 11/11 None
GENEFINDER00000017642 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13329752:13331342:-1 11/11 None
W02A2.3 ENSEMBL cdna:known chromosome:CEL140:IV:13329505:13331357:-1 gene:W02A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13329757-13331348(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-74
Ensembl W02A2.3
Entrez Gene 178294 Entrez gene
SwissProt Q9XUB6 EMBL-EBI
WormBase CE21233 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6030 chitin metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05306 Hypothetical protein W02A2.3 [Caenorhabditis elegans] ref|NP_502562.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-74) [Caenorhabditis elegans] 0.0
blast CAE58621 Hypothetical protein CBG01789 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 9.6E-7
Sequence
Target Sequence 
>C. ELEGANS:179437_S_AT
gaatgagcagatccttgtctccatctcctgctgccaacaacaagagaccaccacccaggc
tccagttcagatgcaaccatgccagtgcaccccaacccaaattcaacagaactgccaaac
cacaaccacccagcaacaatactgcccacaacaatctgctccagttgtccagccacagcc
atgcccactcgtccaaggatccggagttcaaaacgctcaataccaaggaatctgctcatg
gatgatcgacccacttgccactgacccacaatcccgcactcactaccttcaatgccagcc
agctccaaacaacttgttctgcggaagatggcaacgtatgccatgtgccccaggaaccgt
cttcgacgtccaatcccaagtctgcgtctgggacaccaacagccagccaggaactcttcc
aactccagccccatacgtctccacccaggctccacagaacgctcaatgcggatgcaccgg
aggagttcaaatcggatcatgcaaccaaaactaccagtgcccaggacaatcggtctgcca
agtcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGAGCAGATCCTTGTCTCCATC 523 329 597 Antisense
CATCTCCTGCTGCCAACAACAAGAG 669 211 618 Antisense
TCAGATGCAACCATGCCAGTGCACC 370 623 663 Antisense
CCCACTCGTCCAAGGATCCGGAGTT 98 259 780 Antisense
GCTCATGGATGATCGACCCACTTGC 512 299 830 Antisense
AGCCAGCTCCAAACAACTTGTTCTG 148 85 893 Antisense
TGGCAACGTATGCCATGTGCCCCAG 328 545 925 Antisense
TGCGTCTGGGACACCAACAGCCAGC 677 581 979 Antisense
GAACGCTCAATGCGGATGCACCGGA 465 347 1053 Antisense
AAAACTACCAGTGCCCAGGACAATC 247 115 1103 Antisense
CAGGACAATCGGTCTGCCAAGTCGG 303 209 1118 Antisense
Sequence Source Affymetrix Proprietary Database