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[179436_at]

Description T04A8.8 /REP_DB=WormBase Gene ID /WP=CE01077 /TR=Q22144 /GB=CAA84734.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 94      6grp_total > 96      4grp_total > 16      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 263.6
(-3)
P 		281.7
(-2.4)
P 		334.4
(-0.5)
P 		433.4
(3)
P 		170
B 274.7
(-1.5)
P 		266.9
(-2.1)
P 		255.1
(-3)
P 		333.8
(3)
P 		79
C 228.2
(-3)
P 		360
(1)
P 		372.1
(1.4)
P 		424.8
(3)
P 		197
avr 255.5
(-3) 		302.9
(-1) 		320.5
(-0.2) 		397.3
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 823
1 2 3 4 5 6 range
A 299.2
(-3)
P 		395.1
(-2.1)
P 		461.7
(-1.5)
P 		609
(-0.2)
P 		788.6
(1.5)
P 		952.6
(3)
P 		653
B 288.1
(-3)
P 		308.2
(-2.9)
P 		376
(-2.4)
P 		506.8
(-1.4)
P 		830.8
(1)
P 		1111.5
(3)
P 		823
C 317.4
(-2.9)
P 		306.6
(-3)
P 		407.3
(-2.1)
P 		579.8
(-0.7)
P 		807.1
(1.2)
P 		1014.7
(3)
P 		708
avr 301.6
(-3) 		336.6
(-2.7) 		415
(-2.1) 		565.2
(-0.8) 		808.8
(1.2) 		1026.3
(3) 		725
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 96
(3)
P 		61.1
(-3)
P 		87.4
(1.5)
P 		63.4
(-2.6)
P 		35
B 87.6
(3)
P 		65.9
(-1.6)
P 		59.1
(-3)
P 		71.1
(-0.5)
P 		29
C 75.5
(-2.6)
P 		103.5
(0.3)
P 		129.7
(3)
P 		71.6
(-3)
P 		58
avr 86.4
(1.5) 		76.8
(-0.9) 		92.1
(3) 		68.7
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 55.2
(-3)
P 		140.5
(-0.2)
P 		100.5
(-1.5)
P 		154.4
(0.3)
P 		238
(3)
P 		231.9
(2.8)
P 		183
B 100.3
(-2.8)
P 		102.6
(-2.8)
P 		91.3
(-3)
P 		134.2
(-2.2)
P 		337.6
(1.6)
P 		414.5
(3)
P 		323
C 117.6
(-2.4)
P 		93.6
(-3)
P 		103.7
(-2.8)
P 		116.6
(-2.4)
P 		261.2
(1.1)
P 		339.7
(3)
P 		246
avr 91
(-3) 		112.2
(-2.5) 		98.5
(-2.8) 		135.1
(-1.9) 		278.9
(1.7) 		328.7
(3) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6489
Sequence Type Exemplar sequence
Representative Public ID T04A8.8 NCBI
Target Description T04A8.8 /REP_DB=WormBase Gene ID /WP=CE01077 /TR=Q22144 /GB=CAA84734.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065559 NCBI Caenorhabditis elegans T04A8.8 (T04A8.8) mRNA, complete cds. 11/11 None
SNAP00000041094 ENSEMBL cdna:SNAP chromosome:CEL140:III:4693967:4695045:1 11/11 None
GENEFINDER00000041118 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4693967:4695045:1 11/11 None
T04A8.8 ENSEMBL cdna:known chromosome:CEL140:III:4693967:4695165:1 gene:T04A8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4693966-4695045(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04A8.8
Entrez Gene 259502 Entrez gene
SwissProt Q22144 EMBL-EBI
WormBase CE01077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84734 Hypothetical protein T04A8.8 [Caenorhabditis elegans] ref|NP_497960.1| T04A8.8 [Caenorhabditis elegans] 1.0E-169
blast CAE71155 Hypothetical protein CBG18011 [Caenorhabditis briggsae] 2.0E-39
Sequence
Target Sequence 
>C. ELEGANS:179436_AT
aaatcaggagcacaaccggaggttgaagatgtgaaagacgactcagacgcggatgaatca
agcattgctgctgaaaactttcccgtcacagtggttattctggattgtgaaagtcacgga
aatgatatgaaatctcgtcatgacatctttctcgaatcgacgttctctgaaattagaaga
atttatgcgacgaaatggggatgccctgtatcttgtgtagttttcagtcacaatggcaag
acaattgacacatacacgacaccacaaagcttgggttggcgtccgatgacactaccacat
ccactcattgaagcaagcaaggaagcaggagaacctgcggaagtgttcacaattgagaat
tcgcctgactctttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAGGAGCACAACCGGAGGTTG 257 111 385 Antisense
AAGACGACTCAGACGCGGATGAATC 380 153 419 Antisense
TTGCTGCTGAAAACTTTCCCGTCAC 202 703 449 Antisense
TTCCCGTCACAGTGGTTATTCTGGA 424 695 464 Antisense
ATCTCGTCATGACATCTTTCTCGAA 352 33 516 Antisense
TCTCGAATCGACGTTCTCTGAAATT 623 609 534 Antisense
TATGCGACGAAATGGGGATGCCCTG 709 655 568 Antisense
GGATGCCCTGTATCTTGTGTAGTTT 521 513 583 Antisense
CAATTGACACATACACGACACCACA 61 181 626 Antisense
CACCACAAAGCTTGGGTTGGCGTCC 120 201 644 Antisense
ATTGAGAATTCGCCTGACTCTTTCA 535 5 736 Antisense
Sequence Source Affymetrix Proprietary Database