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[179435_at]

Description T04B2.3 /REP_DB=WormBase Gene ID /WP=CE23944 /TR=Q22147 /GB=CAA92610.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_high_8_8 > 53      6grp_highest_nonorm > 52      6grp_total > 62      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 309.4
(-0)
P 		403.6
(3)
P 		322.6
(0.4)
P 		215.3
(-3)
A 		188
B 315.2
(-0.3)
P 		443.6
(3)
P 		392.9
(1.7)
P 		209.5
(-3)
P 		234
C 288.8
(-2.3)
P 		448.5
(2.6)
P 		461.9
(3)
P 		267.3
(-3)
P 		195
avr 304.5
(-0.8) 		431.9
(3) 		392.5
(1.8) 		230.7
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 691
1 2 3 4 5 6 range
A 296.6
(-2.5)
P 		629.8
(0.7)
P 		870.8
(3)
P 		820.8
(2.5)
P 		482.1
(-0.7)
P 		241.3
(-3)
P 		630
B 320.8
(-2.6)
P 		675.5
(0.6)
P 		932
(3)
P 		745.1
(1.3)
P 		507.8
(-0.9)
P 		279.7
(-3)
P 		652
C 261
(-3)
P 		680.9
(0.9)
P 		775.1
(1.7)
P 		911.1
(3)
P 		472.7
(-1)
P 		335.2
(-2.3)
P 		650
avr 292.8
(-2.9) 		662.1
(0.9) 		859.3
(3) 		825.7
(2.6) 		487.5
(-0.9) 		285.4
(-3) 		574
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 112.7
(3)
P 		87.6
(1.1)
P 		84.3
(0.9)
P 		31.5
(-3)
A 		81
B 100.5
(2.2)
P 		109.6
(3)
P 		91
(1.3)
P 		44.7
(-3)
P 		65
C 95.6
(-0.4)
P 		129
(1.3)
P 		161
(3)
P 		45.1
(-3)
P 		116
avr 102.9
(2.2) 		108.7
(2.7) 		112.1
(3) 		40.4
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 54.7
(-3)
P 		224
(3)
P 		189.6
(1.8)
P 		208.2
(2.4)
P 		145.5
(0.2)
P 		58.8
(-2.9)
P 		169
B 111.6
(-2.6)
P 		224.8
(2.9)
P 		226.3
(3)
P 		197.3
(1.6)
P 		206.3
(2)
P 		104.3
(-3)
P 		122
C 96.7
(-3)
P 		207.8
(3)
P 		197.3
(2.4)
P 		183.2
(1.7)
P 		153
(0)
P 		112.2
(-2.2)
P 		111
avr 87.7
(-3) 		218.9
(3) 		204.4
(2.3) 		196.2
(2) 		168.3
(0.7) 		91.8
(-2.8) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9610
Sequence Type Exemplar sequence
Representative Public ID T04B2.3 NCBI
Target Description T04B2.3 /REP_DB=WormBase Gene ID /WP=CE23944 /TR=Q22147 /GB=CAA92610.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069418 NCBI Caenorhabditis elegans T04B2.3 (T04B2.3) mRNA, complete cds. 11/11 None
SNAP00000005415 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10048658:10050481:1 11/11 None
GENEFINDER00000005424 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10047380:10050481:1 11/11 None
T04B2.3 ENSEMBL cdna:known chromosome:CEL140:IV:10047380:10050481:1 gene:T04B2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10047385-10050487(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04B2.3
Entrez Gene 177868 Entrez gene
SwissProt Q22147 EMBL-EBI
WormBase CE23944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92610 Hypothetical protein T04B2.3 [Caenorhabditis elegans] ref|NP_501819.1| T04B2.3 [Caenorhabditis elegans] 0.0
blast CAE59939 Hypothetical protein CBG03425 [Caenorhabditis briggsae] 0.0
blast CAA92610 Hypothetical protein T04B2.3 [Caenorhabditis elegans] ref|NP_501819.1| T04B2.3 [Caenorhabditis elegans] 1.0E-150
blast CAE59939 Hypothetical protein CBG03425 [Caenorhabditis briggsae] 1.0E-132
Sequence
Target Sequence 
>C. ELEGANS:179435_AT
ggagttctacacgagagtaccggagaaagaacatcggaagacctcagttcttcggtgtac
gaggttgcagctcctggaattatggaaactttaacacagacaatttctggaacatcaaat
aaagaacttcaaaaactggatcaagaaattaatggaaatgttatgacatcatcaatggtc
ttgagaaaacttgcgaatcacactttcatatcagatggctgttcagaaaagacactggaa
caagaaatgaaggatttaacattcagaaggcctatcacaccgcaaagatacggatatcca
caaatcgataacaatgtatctccttacgttcatttggcaacgttggattcaaaaaagaaa
aaagtcacaaatcatttaatcgataaggatgcactgaaagcatatttggatgaagaggaa
gaggaagaagatttcttggaaggactgaatattacagttaataactttgacacgtgcgaa
gatttgagtctttccgatgttgaacaaccatctcgattccaacaatttcaagatgcgatt
cgaaagaatacgatagtcatttctacggatcttcaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTCTACACGAGAGTACCGGAG 410 517 643 Antisense
AGACCTCAGTTCTTCGGTGTACGAG 252 59 681 Antisense
GTACGAGGTTGCAGCTCCTGGAATT 536 457 699 Antisense
AAAACTTGCGAATCACACTTTCATA 113 131 828 Antisense
CACACTTTCATATCAGATGGCTGTT 557 195 841 Antisense
TTCAGAAGGCCTATCACACCGCAAA 424 687 904 Antisense
GTATCTCCTTACGTTCATTTGGCAA 590 453 958 Antisense
GATTTGAGTCTTTCCGATGTTGAAC 14 427 1123 Antisense
ATGTTGAACAACCATCTCGATTCCA 451 47 1139 Antisense
AACCATCTCGATTCCAACAATTTCA 481 147 1148 Antisense
TAGTCATTTCTACGGATCTTCAAGC 587 651 1196 Antisense
Sequence Source Affymetrix Proprietary Database