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[179434_at]

Description E01B7.2 /REP_DB=WormBase Gene ID /WP=CE23622 /TR=Q9U3K8 /GB=CAB54214.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 91      6grp_total > 64      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 149.1
(-3)
P 		206.5
(2.6)
P 		171.4
(-0.8)
P 		210.6
(3)
P 		62
B 175.5
(-1.5)
P 		156.8
(-3)
P 		211.3
(1.4)
P 		231.8
(3)
P 		75
C 139.6
(-3)
P 		185.4
(-0.2)
P 		210
(1.4)
P 		236.3
(3)
P 		97
avr 154.7
(-3) 		182.9
(-0.6) 		197.6
(0.6) 		226.2
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 215.2
(-0.2)
P 		183.6
(-1.4)
P 		293.1
(3)
P 		240.7
(0.9)
P 		145
(-3)
P 		196.7
(-0.9)
P 		148
B 165.3
(-3)
P 		211.1
(-1.5)
P 		342.9
(3)
P 		173.7
(-2.7)
P 		182.6
(-2.4)
P 		232.8
(-0.7)
P 		178
C 157.2
(-2.8)
P 		219
(-0.2)
P 		152.3
(-3)
P 		265.5
(1.7)
P 		215.9
(-0.4)
P 		297.4
(3)
P 		145
avr 179.2
(-3) 		204.6
(-1.2) 		262.8
(3) 		226.6
(0.4) 		181.2
(-2.9) 		242.3
(1.5) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 54.3
(3)
P 		44.8
(0.6)
P 		44.8
(0.6)
P 		30.8
(-3)
P 		24
B 56
(3)
P 		38.7
(-3)
P 		49
(0.6)
P 		49.4
(0.7)
P 		17
C 46.2
(-1.9)
P 		53.3
(-0.6)
P 		73.2
(3)
P 		39.8
(-3)
P 		33
avr 52.2
(1.7) 		45.6
(-0.9) 		55.7
(3) 		40
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 39.7
(-3)
P 		65.3
(3)
P 		63.8
(2.6)
P 		61
(2)
P 		43.7
(-2.1)
P 		47.9
(-1.1)
P 		26
B 57.5
(-1.3)
P 		70.3
(0.6)
P 		83.3
(2.5)
P 		46
(-3)
P 		74.2
(1.1)
P 		86.8
(3)
P 		41
C 58.3
(-1.1)
P 		66.8
(-0.2)
P 		38.8
(-3)
P 		53.4
(-1.6)
P 		69.9
(0.1)
P 		99.6
(3)
P 		61
avr 51.8
(-3) 		67.5
(0.6) 		62
(-0.7) 		53.5
(-2.6) 		62.6
(-0.5) 		78.1
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13142
Sequence Type Exemplar sequence
Representative Public ID E01B7.2 NCBI
Target Description E01B7.2 /REP_DB=WormBase Gene ID /WP=CE23622 /TR=Q9U3K8 /GB=CAB54214.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075111 NCBI Caenorhabditis elegans E01B7.2 (E01B7.2) mRNA, complete cds. 11/11 None
SNAP00000036353 ENSEMBL cdna:SNAP chromosome:CEL140:V:17924360:17931229:1 9/11 None
GENEFINDER00000036355 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17923968:17926691:1 9/11 None
E01B7.2 ENSEMBL cdna:known chromosome:CEL140:V:17924206:17926133:1 gene:E01B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17924205-17926133(+) 87.45 100.0
Public Domain and Genome References
Gene Title
Ensembl E01B7.2
Entrez Gene 183980 Entrez gene
SwissProt Q9U3K8 EMBL-EBI
WormBase CE23622 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05712 Hypothetical protein E01B7.1 [Caenorhabditis elegans] ref|NP_507513.1| E01B7.1 [Caenorhabditis elegans] 1.0E-137
blast CAB54214 Hypothetical protein E01B7.2 [Caenorhabditis elegans] ref|NP_507512.1| E01B7.2 [Caenorhabditis elegans] 1.0E-132
blast E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 1.0E-119
blast E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 2.0E-94
blast CAB54214 Hypothetical protein E01B7.2 [Caenorhabditis elegans] ref|NP_507512.1| E01B7.2 [Caenorhabditis elegans] 3.0E-94
blast E89403 protein C06H5.4 [imported] - Caenorhabditis elegans 1.0E-93
blast CAB54214 Hypothetical protein E01B7.2 [Caenorhabditis elegans] ref|NP_507512.1| E01B7.2 [Caenorhabditis elegans] 1.0E-92
blast CAE61702 Hypothetical protein CBG05650 [Caenorhabditis briggsae] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:179434_AT
aaattaggccctcacgactggcaaaaagacgtaacactggaggatcgaatgaaaaatgtt
cagaagattgttaacacattttattgcacaaaatccgggccccatccgaggagaattgac
gaattaatgtggttttcgcgggaaatggagatcattttctattctcgggcggataatcga
tatttatatgatggaggaattgaatcaatgatacaatctatgcaaattgctataaatcgg
gacccttatctcacaaaaattcgacaaatgaatgaaattccatcaactgaacacctcgag
aagcttttcacattttcagcaccacgtgagaagcttgaagacgatgaattactggcaaaa
ggagcagaaattatcaaattaattacaaatgatcgttttgaaattcacgatttaaatatt
gaaccacaaccgattcaaccgattttgcctaaaatcgtcgtcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTAGGCCCTCACGACTGGCAAA 492 113 163 Antisense
GACGTAACACTGGAGGATCGAATGA 103 379 190 Antisense
ATCATTTTCTATTCTCGGGCGGATA 640 29 313 Antisense
CAAATTGCTATAAATCGGGACCCTT 233 189 385 Antisense
GGGACCCTTATCTCACAAAAATTCG 573 491 401 Antisense
GAAATTCCATCAACTGAACACCTCG 329 363 436 Antisense
GAACACCTCGAGAAGCTTTTCACAT 545 351 451 Antisense
TTTTCAGCACCACGTGAGAAGCTTG 663 675 475 Antisense
GAACCACAACCGATTCAACCGATTT 689 343 583 Antisense
CAACCGATTCAACCGATTTTGCCTA 276 185 589 Antisense
GATTTTGCCTAAAATCGTCGTCGAA 320 429 603 Antisense
Sequence Source Affymetrix Proprietary Database