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[179433_at]

Description R04D3.9 /REP_DB=WormBase Gene ID /WP=CE16286 /TR=Q21717 /GB=CAA94167.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 09      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2.4
(-3)
A 		5
(0.3)
A 		5.8
(1.3)
A 		7.1
(3)
A 		5
B 5.4
(3)
A 		4.4
(-3)
A 		5.4
(3)
A 		4.4
(-3)
A 		1
C 3.3
(-2.8)
A 		6.2
(-2.4)
A 		2.2
(-3)
A 		44.6
(3)
A 		42
avr 3.7
(-3) 		5.2
(-2.4) 		4.5
(-2.7) 		18.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6.8
(3)
A 		2.8
(-3)
A 		3.2
(-2.4)
A 		3.7
(-1.7)
A 		2.9
(-2.9)
A 		4.1
(-1.1)
A 		4
B 4.5
(3)
A 		2.8
(-3)
A 		2.8
(-3)
A 		3.5
(-0.5)
A 		4.1
(1.6)
A 		3.8
(0.5)
A 		2
C 3.2
(-1.8)
A 		7.4
(3)
A 		4
(-0.9)
A 		4.4
(-0.5)
A 		2.2
(-3)
A 		5.1
(0.3)
A 		5
avr 4.8
(3) 		4.3
(1.2) 		3.3
(-2.3) 		3.9
(-0.2) 		3.1
(-3) 		4.3
(1.2) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.9
(-3)
A 		1.1
(-1)
A 		1.5
(3)
A 		1
(-2)
A 		1
B 1.7
(3)
A 		1.1
(-1.5)
A 		1.3
(0)
A 		0.9
(-3)
A 		1
C 1.1
(-2.7)
A 		1.8
(-2.1)
A 		0.8
(-3)
A 		7.5
(3)
A 		7
avr 1.2
(-3) 		1.3
(-2.7) 		1.2
(-3) 		3.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.2
(3)
A 		1
(0.6)
A 		0.7
(-3)
A 		0.9
(-0.6)
A 		0.9
(-0.6)
A 		1
(0.6)
A 		1
B 1.6
(2.4)
A 		0.9
(-1.8)
A 		0.7
(-3)
A 		0.9
(-1.8)
A 		1.7
(3)
A 		1.4
(1.2)
A 		1
C 1.2
(-1.1)
A 		2.3
(3)
A 		1
(-1.9)
A 		0.9
(-2.3)
A 		0.7
(-3)
A 		1.7
(0.8)
A 		2
avr 1.3
(2) 		1.4
(3) 		0.8
(-3) 		0.9
(-2) 		1.1
(0) 		1.4
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17986
Sequence Type Exemplar sequence
Representative Public ID R04D3.9 NCBI
Target Description R04D3.9 /REP_DB=WormBase Gene ID /WP=CE16286 /TR=Q21717 /GB=CAA94167.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077814(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077814 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-43) (srd-43) mRNA, complete cds. 11/11 None
R04D3.9 ENSEMBL cdna:known chromosome:CEL140:X:13303825:13305764:-1 gene:R04D3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014118 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13303824-13305764(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-43
Ensembl R04D3.9
Entrez Gene 187577 Entrez gene
SwissProt Q21717 EMBL-EBI
WormBase CE16286 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94167 Hypothetical protein R04D3.9 [Caenorhabditis elegans] ref|NP_510215.1| Serpentine Receptor, class D (delta) family member (srd-43) [Caenorhabditis elegans] 1.0E-179
blast CAA92176 Hypothetical protein F17A2.8 [Caenorhabditis elegans] emb|CAA92163.1| Hypothetical protein F17A2.8 [Caenorhabditis elegans] ref|NP_510068.1| Serpentine Receptor, class D (delta) family member (srd-44) [Caenorhabditis elegans] sp|O17823|SRD44_CAEEL Serpentine receptor class delta-44 (Protein srd-44) 1.0E-126
blast CAA94165 Hypothetical protein R04D3.7 [Caenorhabditis elegans] ref|NP_510214.2| Serpentine Receptor, class D (delta) family member (srd-42) [Caenorhabditis elegans] 1.0E-119
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510215.1 6 7-29,85-107,127-144,198-217,248-270,280-302
R04D3.9 6 7-29,85-107,127-144,198-217,248-270,280-302
Sequence
Target Sequence 
>C. ELEGANS:179433_AT
gcaagctttacctttggaaattcgccaaaaatacattttgataaaccagtcccttgatga
atactctgtcattggaatagtagattattcggttttacccagtcgtataaatgctacaat
tgtcaatggtttagtcatcattttaccaatcacatgtcttttattacgaagaaaaatact
caagcttctcacgggacctgatagatcatccgatgcgttacattcccaaaatagaatttt
cattcagggcctcactttgcaaattttctgtcatacgctggtttacgttcctatttttgt
gtgctcatcaattagtctggtgacaaaaacagaatacattttcccgcagtatttcatatt
tgttttaccgcatctaacaactgtcatcgatccggctgtaacaatgtatttcgtgacgcc
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGCTTTACCTTTGGAAATTCGC 200 313 498 Antisense
ACCAGTCCCTTGATGAATACTCTGT 160 87 542 Antisense
AGCTTCTCACGGGACCTGATAGATC 413 79 680 Antisense
ATCCGATGCGTTACATTCCCAAAAT 267 39 705 Antisense
TTTCATTCAGGGCCTCACTTTGCAA 344 671 735 Antisense
GCTGGTTTACGTTCCTATTTTTGTG 413 293 774 Antisense
TGTGTGCTCATCAATTAGTCTGGTG 146 555 795 Antisense
ACATTTTCCCGCAGTATTTCATATT 564 105 833 Antisense
TTTACCGCATCTAACAACTGTCATC 632 673 861 Antisense
GTCATCGATCCGGCTGTAACAATGT 68 467 880 Antisense
GTAACAATGTATTTCGTGACGCCGT 661 461 895 Antisense
Sequence Source Affymetrix Proprietary Database