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[179432_at]

Description F11E6.2 /REP_DB=WormBase Gene ID /WP=CE19782 /TR=Q9U3J9 /GB=CAB62799.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 0      6grp_cgc > 99      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 18.6
(0.5)
A 		1.8
(-3)
A 		30.5
(3)
A 		29.8
(2.9)
A 		29
B 17.8
(-1.2)
A 		15.8
(-3)
A 		21.1
(1.7)
A 		22.5
(3)
A 		7
C 12.6
(-3)
A 		13.8
(-2.7)
A 		18.4
(-1.5)
A 		36.3
(3)
A 		24
avr 16.3
(-1.2) 		10.5
(-3) 		23.3
(1) 		29.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 390
1 2 3 4 5 6 range
A 18.6
(-2.6)
A 		19
(-2.6)
A 		2.2
(-3)
A 		51.6
(-1.8)
P 		254.9
(3)
P 		56.2
(-1.7)
P 		253
B 14.4
(-2.9)
A 		10.8
(-3)
A 		8.6
(-3)
A 		68.2
(-1.9)
P 		319.7
(3)
P 		50
(-2.2)
P 		311
C 1.9
(-3)
A 		16.1
(-2.8)
A 		30.6
(-2.6)
P 		34.9
(-2.5)
A 		392.3
(3)
P 		50.6
(-2.3)
P 		390
avr 11.6
(-3) 		15.3
(-2.9) 		13.8
(-3) 		51.6
(-2.2) 		322.3
(3) 		52.3
(-2.2) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.8
(2.1)
A 		0.4
(-3)
A 		8
(3)
A 		4.4
(0.2)
A 		8
B 5.7
(3)
A 		3.9
(-3)
A 		4.9
(0.3)
A 		4.8
(-0)
A 		2
C 4.2
(-2.5)
A 		4
(-3)
A 		6.4
(3)
A 		6.1
(2.3)
A 		2
avr 5.6
(1.7) 		2.8
(-3) 		6.4
(3) 		5.1
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 3.4
(-2.8)
A 		6.8
(-2.5)
A 		0.5
(-3)
A 		13.1
(-2)
P 		76.9
(3)
P 		13.7
(-2)
P 		76
B 5
(-2.9)
A 		3.6
(-2.9)
A 		2.1
(-3)
A 		18.1
(-2.2)
P 		129.9
(3)
P 		18.7
(-2.2)
P 		128
C 0.7
(-3)
A 		4.9
(-2.8)
A 		7.8
(-2.7)
P 		7
(-2.7)
A 		127
(3)
P 		16.9
(-2.2)
P 		126
avr 3
(-3) 		5.1
(-2.9) 		3.5
(-3) 		12.7
(-2.5) 		111.3
(3) 		16.4
(-2.3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10289
Sequence Type Exemplar sequence
Representative Public ID F11E6.2 NCBI
Target Description F11E6.2 /REP_DB=WormBase Gene ID /WP=CE19782 /TR=Q9U3J9 /GB=CAB62799.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070716 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-24) (grl-24) mRNA, complete cds. 11/11 None
F11E6.2 ENSEMBL cdna:known chromosome:CEL140:IV:17475372:17475793:-1 gene:F11E6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171428 8/11 Cross Hyb Matching Probes None
SNAP00000042537 4/11 Cross Hyb Matching Probes None
F11E6.9 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17475445-17475799(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-24
Ensembl F11E6.2
Entrez Gene 178534 Entrez gene
SwissProt Q9U3J9 EMBL-EBI
WormBase CE19782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB62799 Hypothetical protein F11E6.2 [Caenorhabditis elegans] ref|NP_503117.1| GRound-Like (grd related) family member (grl-24) [Caenorhabditis elegans] 7.0E-48
blast CAE57469 Hypothetical protein CBG00435 [Caenorhabditis briggsae] 5.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 6.0E-18
Sequence
Target Sequence 
>C. ELEGANS:179432_AT
gtacttgtcatgtttttcactctggcatcatgccaagatgataattttgaaggtgaacgt
tgtaatgacgttattttgtatgatattataaaaaaggcctccaaaaagactgacgatccg
gtaataatacgaagaacttcaatggacacaatgcaaaatgtgtttcctttggcaagaagt
atgggatgtatttgtaccgatcgaaacttccaatttcctgatttcacaaatcacagatac
tgttctgttagagtttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTTGTCATGTTTTTCACTCTGG 415 459 37 Antisense
TGTTTTTCACTCTGGCATCATGCCA 241 561 47 Antisense
GTTGTAATGACGTTATTTTGTATGA 34 437 95 Antisense
AGGCCTCCAAAAAGACTGACGATCC 621 51 131 Antisense
GACTGACGATCCGGTAATAATACGA 555 373 144 Antisense
GAAGAACTTCAATGGACACAATGCA 668 339 167 Antisense
AAATGTGTTTCCTTTGGCAAGAAGT 26 103 192 Antisense
GTATGGGATGTATTTGTACCGATCG 450 455 215 Antisense
GTATTTGTACCGATCGAAACTTCCA 133 451 224 Antisense
AAACTTCCAATTTCCTGATTTCACA 228 129 240 Antisense
CAGATACTGTTCTGTTAGAGTTTCA 145 203 270 Antisense
Sequence Source Affymetrix Proprietary Database