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[179431_at]

Description C25D7.9 /REP_DB=WormBase Gene ID /WP=CE08395 /TR=O17600 /GB=CAB02778.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 30.7
(-3)
A 		32.9
(-2.7)
A 		35.7
(-2.4)
A 		77.7
(3)
A 		47
B 41.6
(2.7)
A 		42.8
(3)
A 		21.6
(-2)
A 		17.6
(-3)
A 		25
C 42
(-2.7)
A 		40.5
(-3)
A 		40.9
(-2.9)
A 		70.2
(3)
A 		30
avr 38.1
(-1.6) 		38.7
(-1.4) 		32.7
(-3) 		55.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 19.5
(-2.9)
A 		28.3
(-0.4)
A 		32.3
(0.7)
A 		40.7
(3)
A 		19.1
(-3)
A 		39.4
(2.6)
A 		22
B 47.3
(3)
A 		38.1
(0.5)
A 		33
(-1)
A 		41.1
(1.3)
A 		25.6
(-3)
A 		38.7
(0.6)
A 		22
C 3.2
(-3)
A 		27.8
(0.5)
A 		18.7
(-0.8)
A 		13
(-1.6)
A 		45.6
(3)
A 		31.2
(1)
A 		42
avr 23.3
(-3) 		31.4
(0.7) 		28
(-0.8) 		31.6
(0.8) 		30.1
(0.1) 		36.4
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.2
(2.7)
A 		7.1
(-3)
A 		9.3
(0.1)
A 		11.4
(3)
A 		4
B 13.3
(3)
A 		10.6
(1.3)
A 		5
(-2.2)
A 		3.7
(-3)
A 		10
C 13.9
(2.1)
A 		11.6
(-3)
A 		14.3
(3)
A 		11.8
(-2.6)
A 		3
avr 12.8
(3) 		9.8
(-1.7) 		9.5
(-2.2) 		9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.6
(-3)
A 		10.1
(2.8)
A 		7
(0)
A 		10.3
(3)
A 		5.8
(-1)
A 		9.6
(2.4)
A 		7
B 16.4
(3)
A 		12.7
(0.4)
A 		8
(-3)
A 		10.9
(-0.9)
A 		10.4
(-1.3)
A 		14.4
(1.6)
A 		8
C 1.2
(-3)
A 		8.5
(0.2)
A 		4.8
(-1.4)
A 		2.6
(-2.4)
A 		14.7
(3)
A 		10.5
(1.1)
A 		14
avr 7.1
(-2.4) 		10.4
(1.7) 		6.6
(-3) 		7.9
(-1.4) 		10.3
(1.5) 		11.5
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14524
Sequence Type Exemplar sequence
Representative Public ID C25D7.9 NCBI
Target Description C25D7.9 /REP_DB=WormBase Gene ID /WP=CE08395 /TR=O17600 /GB=CAB02778.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074307 NCBI Caenorhabditis elegans C25D7.9 (C25D7.9) mRNA, complete cds. 11/11 None
C25D7.9 ENSEMBL cdna:known chromosome:CEL140:V:15067721:15067903:1 gene:C25D7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15067720-15067903(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25D7.9
Entrez Gene 182885 Entrez gene
SwissProt O17600 EMBL-EBI
WormBase CE08395 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02778 Hypothetical protein C25D7.9 [Caenorhabditis elegans] ref|NP_506708.1| C25D7.9 [Caenorhabditis elegans] 3.0E-27
Sequence
Target Sequence 
>C. ELEGANS:179431_AT
gttggtgacgatgagggtgggggtagagcgttggggggtgtccgttgatgcccttgagaa
aattatcgattcgggagtctgcccccggctgtcctctccccaaattgtgtgcgtgtggcc
aactaccacccaacacattcttcttgttgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGTGACGATGAGGGTGGGGGTA 706 431 15 Antisense
ATGAGGGTGGGGGTAGAGCGTTGGG 139 47 25 Antisense
GTCCGTTGATGCCCTTGAGAAAATT 56 477 54 Antisense
GATGCCCTTGAGAAAATTATCGATT 574 413 61 Antisense
TTATCGATTCGGGAGTCTGCCCCCG 192 681 77 Antisense
CTCTCCCCAAATTGTGTGCGTGTGG 507 231 108 Antisense
TCCCCAAATTGTGTGCGTGTGGCCA 578 595 111 Antisense
ATTGTGTGCGTGTGGCCAACTACCA 398 3 118 Antisense
TGTGTGCGTGTGGCCAACTACCACC 257 555 120 Antisense
ACCACCCAACACATTCTTCTTGTTG 411 85 139 Antisense
CACCCAACACATTCTTCTTGTTGCG 228 201 141 Antisense
Sequence Source Affymetrix Proprietary Database