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[179430_s_at]

Description C49C3.9 /REP_DB=WormBase Gene ID /WP=CE19748 /TR=Q9XUF6 /GB=CAB05162.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 63      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 63      6grp_total > 63      4grp_total > 56      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 459
1 2 3 4 range
A 571
(-2.8)
P 		562.7
(-3)
P 		845.4
(3)
P 		573.2
(-2.8)
P 		283
B 601.3
(0.2)
P 		517.4
(-1)
P 		783.1
(3)
P 		387.7
(-3)
P 		395
C 642.8
(0.9)
P 		539.9
(-0.7)
P 		779.5
(3)
P 		386.8
(-3)
P 		393
avr 605
(-0.4) 		540
(-1.5) 		802.7
(3) 		449.2
(-3) 		354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 368
(-3)
P 		552.5
(-0.8)
P 		787.1
(2)
P 		873
(3)
P 		564.1
(-0.7)
P 		682.9
(0.7)
P 		505
B 299.3
(-3)
P 		629.4
(0.2)
P 		913.6
(3)
P 		689.5
(0.8)
P 		567.1
(-0.4)
P 		566.4
(-0.4)
P 		614
C 425
(-3)
P 		582.6
(-0.7)
P 		773.8
(2.2)
P 		830.3
(3)
P 		486.7
(-2.1)
P 		552.3
(-1.1)
P 		405
avr 364.1
(-3) 		588.2
(-0.1) 		824.8
(3) 		797.6
(2.6) 		539.3
(-0.7) 		600.5
(0.1) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 207.9
(2.4)
P 		122.1
(-1.3)
P 		221
(3)
P 		83.9
(-3)
P 		137
B 191.8
(3)
P 		127.8
(-0.5)
P 		181.5
(2.4)
P 		82.6
(-3)
P 		109
C 212.8
(1.3)
P 		155.2
(-0.4)
P 		271.7
(3)
P 		65.2
(-3)
P 		207
avr 204.2
(2.2) 		135
(-0.6) 		224.7
(3) 		77.2
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 67.8
(-3)
P 		196.5
(2)
P 		171.4
(1)
P 		221.4
(3)
P 		170.2
(1)
P 		166.3
(0.8)
P 		154
B 104.1
(-3)
P 		209.5
(2)
P 		221.9
(2.6)
P 		182.6
(0.7)
P 		230.4
(3)
P 		211.2
(2.1)
P 		126
C 157.5
(-3)
P 		177.8
(0.1)
P 		197
(3)
P 		167
(-1.6)
P 		157.5
(-3)
P 		184.9
(1.2)
P 		40
avr 109.8
(-3) 		194.6
(2.8) 		196.8
(3) 		190.3
(2.6) 		186
(2.3) 		187.5
(2.4) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179430_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10228
Sequence Type Exemplar sequence
Representative Public ID C49C3.9 NCBI
Target Description C49C3.9 /REP_DB=WormBase Gene ID /WP=CE19748 /TR=Q9XUF6 /GB=CAB05162.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070687 NCBI Caenorhabditis elegans C49C3.9 (C49C3.9) mRNA, complete cds. 11/11 None
GENEFINDER00000040206 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17336882:17342188:-1 10/11 None
C49C3.9 ENSEMBL cdna:known chromosome:CEL140:IV:17339614:17342269:-1 gene:C49C3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17339667-17342194(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49C3.9
Entrez Gene 178519 Entrez gene
SwissProt Q9XUF6 EMBL-EBI
WormBase CE19748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05162 Hypothetical protein C49C3.9 [Caenorhabditis elegans] ref|NP_503088.1| C49C3.9 [Caenorhabditis elegans] 0.0
blast CAB54196 Hypothetical protein C49C3.10 [Caenorhabditis elegans] ref|NP_001023086.1| C49C3.10 [Caenorhabditis elegans] 0.0
blast CAE57479 Hypothetical protein CBG00447 [Caenorhabditis briggsae] 1.0E-147
blast CAE57431 Hypothetical protein CBG00392 [Caenorhabditis briggsae] 1.0E-131
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-60
hanks 3.1.5 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk6 2.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.8E-8
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-33
Sequence
Target Sequence 
>C. ELEGANS:179430_S_AT
gggactacatatcggaacatctcttttagaggagatggggaggtcacgatttatgcagga
tgtgttactggtgaagaggaagataagaagattgccacaatttcaccttcaaactcagtg
aattacgaggatatccttatttatggaacatgcaagacatatgttttaacaagaggagta
cttcagtggtcaactgtgcaatatcaaactggaaattatcgtcatagaattggtaggaaa
ggagttataatgagcaacacgtatccctaccgaagtacgcaaaatgtgcgctttgccaac
catttgattcaggctccaaaagacgatttcaaagaaaacattattgtaacctatgaagtt
gtgcatataggggctaatgtgaaactaaatattgatcaagacatcaaagcaaatcaagat
gttaataaaaccttgagctcgtccgacacaggaactacatttacatctgtttcaacatat
caacaatacataacatactcaattccttcaggctctgaaggatttttggtgcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACTACATATCGGAACATCTCTT 360 495 874 Antisense
GGGGAGGTCACGATTTATGCAGGAT 469 493 910 Antisense
GGAGTACTTCAGTGGTCAACTGTGC 230 517 1048 Antisense
TAATGAGCAACACGTATCCCTACCG 199 635 1121 Antisense
GTATCCCTACCGAAGTACGCAAAAT 142 443 1134 Antisense
CAAAATGTGCGCTTTGCCAACCATT 166 191 1153 Antisense
GCGCTTTGCCAACCATTTGATTCAG 488 285 1161 Antisense
TGAGCTCGTCCGACACAGGAACTAC 626 567 1307 Antisense
GGAACTACATTTACATCTGTTTCAA 637 529 1324 Antisense
AACATACTCAATTCCTTCAGGCTCT 33 139 1365 Antisense
GGCTCTGAAGGATTTTTGGTGCGAT 709 537 1384 Antisense
Sequence Source Affymetrix Proprietary Database