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[179429_at]

Description F31E9.4 /REP_DB=WormBase Gene ID /WP=CE15938 /TR=O45427 /GB=CAB07200.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 31.6
(0.2)
A 		30.4
(-0.3)
A 		23.8
(-3)
A 		38.4
(3)
A 		15
B 21.4
(-2.7)
A 		28.3
(-1.8)
A 		18.9
(-3)
A 		64.1
(3)
A 		45
C 9.3
(-1.9)
A 		6.7
(-2.3)
A 		1.8
(-3)
A 		44.1
(3)
A 		42
avr 20.8
(-1.9) 		21.8
(-1.8) 		14.8
(-3) 		48.9
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 41.7
(2.8)
A 		16.5
(-1.4)
A 		7
(-3)
A 		9.1
(-2.7)
A 		43.1
(3)
A 		21.8
(-0.5)
A 		36
B 22
(1.3)
A 		25.7
(2.1)
A 		2.8
(-3)
A 		29.8
(3)
A 		12.4
(-0.9)
A 		20.2
(0.9)
A 		27
C 2.8
(-2.9)
A 		47.9
(3)
A 		15.7
(-1.2)
A 		2.2
(-3)
A 		2.6
(-2.9)
A 		25.5
(0.1)
A 		46
avr 22.2
(0.8) 		30
(3) 		8.5
(-3) 		13.7
(-1.5) 		19.4
(0) 		22.5
(0.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.5
(3)
A 		6.6
(-2)
A 		6.2
(-2.4)
A 		5.6
(-3)
A 		6
B 6.8
(-1.5)
A 		7
(-1.3)
A 		4.4
(-3)
A 		13.7
(3)
A 		9
C 3.1
(-0.8)
A 		1.9
(-1.9)
A 		0.6
(-3)
A 		7.4
(3)
A 		7
avr 7.1
(0.9) 		5.2
(-1.3) 		3.7
(-3) 		8.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.7
(0.2)
A 		5.9
(-0.7)
A 		1.5
(-3)
A 		2.3
(-2.6)
A 		13
(3)
A 		5.3
(-1)
A 		12
B 7.7
(2.4)
A 		8.5
(3)
A 		0.7
(-3)
A 		7.9
(2.5)
A 		5
(0.3)
A 		7.5
(2.2)
A 		8
C 1.1
(-2.7)
A 		14.6
(3)
A 		4
(-1.5)
A 		0.4
(-3)
A 		0.9
(-2.8)
A 		8.5
(0.4)
A 		14
avr 5.5
(-0.3) 		9.7
(3) 		2.1
(-3) 		3.5
(-1.9) 		6.3
(0.3) 		7.1
(0.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179429_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14118
Sequence Type Exemplar sequence
Representative Public ID F31E9.4 NCBI
Target Description F31E9.4 /REP_DB=WormBase Gene ID /WP=CE15938 /TR=O45427 /GB=CAB07200.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074985(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074985 NCBI Caenorhabditis elegans F31E9.4 (F31E9.4) mRNA, complete cds. 11/11 None
SNAP00000027115 ENSEMBL cdna:SNAP chromosome:CEL140:V:17326722:17330498:-1 11/11 None
GENEFINDER00000027118 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17329145:17330498:-1 11/11 None
F31E9.4 ENSEMBL cdna:known chromosome:CEL140:V:17329145:17330498:-1 gene:F31E9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17329144-17330498(-) 99.81 100.0
chrV:17554081-17555392(-) 93.14 93.33
Public Domain and Genome References
Gene Title
Gene Symbol sdz-16
Ensembl F31E9.4
Entrez Gene 180147 Entrez gene
SwissProt O45427 EMBL-EBI
WormBase CE15938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07200 Hypothetical protein F31E9.4 [Caenorhabditis elegans] ref|NP_507386.1| F31E9.4 [Caenorhabditis elegans] 0.0
blast CAB63435 Hypothetical protein C38D9.8 [Caenorhabditis elegans] ref|NP_507446.1| C38D9.8 [Caenorhabditis elegans] 1.0E-172
blast CAA16370 Hypothetical protein Y44A6C.2 [Caenorhabditis elegans] ref|NP_508001.1| Y44A6C.2 [Caenorhabditis elegans] 6.0E-51
Sequence
Target Sequence 
>C. ELEGANS:179429_AT
gatgagttggtggagtcaatcagcgtcgagaaaggaatcgtattgtctggtgaagcctgg
agcaacagtgataagatctacaacgtggactatttgtttgtgggccactctggtaacatg
gctctcacggatcttctccagttcaacaatcggatcgtttttctggatcgtgtttcaact
tccaaccagaccatccgcaatttcctgcaagttctgaaaaaatccaatagtcaactggaa
gttctaacgattcgagatagttgggaaggaagttgggatccaattgaagtacttgaagga
ctcaacgcgcaggaatggaacccagagcaccggccacaaaagttcttcctcaactcatcc
cattccaaaaatctcttgaagatccagcagcatttctacccaaaacagaaggattcattg
gcaaatggaattgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGTTGGTGGAGTCAATCAGCG 119 411 445 Antisense
GGTGGAGTCAATCAGCGTCGAGAAA 600 499 453 Antisense
GGAATCGTATTGTCTGGTGAAGCCT 339 531 478 Antisense
GTCTGGTGAAGCCTGGAGCAACAGT 480 471 489 Antisense
TGGACTATTTGTTTGTGGGCCACTC 181 549 530 Antisense
ATTTGTTTGTGGGCCACTCTGGTAA 559 15 536 Antisense
ATCCGCAATTTCCTGCAAGTTCTGA 203 39 637 Antisense
GCAATTTCCTGCAAGTTCTGAAAAA 98 323 641 Antisense
GGCCACAAAAGTTCTTCCTCAACTC 317 543 776 Antisense
CACAAAAGTTCTTCCTCAACTCATC 264 195 779 Antisense
GGATTCATTGGCAAATGGAATTGAC 444 509 855 Antisense
Sequence Source Affymetrix Proprietary Database