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[179428_at]

Description Y6E2A.5 /REP_DB=WormBase Gene ID /WP=CE20186 /TR=Q9XXT8 /GB=CAA15971.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 56.5
(-1)
A 		57.6
(-0.9)
A 		3.6
(-3)
A 		161.5
(3)
A 		158
B 50
(-1.4)
P 		6.5
(-3)
A 		5.3
(-3)
A 		171.5
(3)
P 		166
C 54.8
(-1.4)
P 		2.2
(-3)
A 		32.4
(-2.1)
A 		204.9
(3)
P 		203
avr 53.8
(-1.5) 		22.1
(-2.7) 		13.8
(-3) 		179.3
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 101.4
(-2.2)
A 		90.6
(-3)
A 		171.4
(3)
P 		138.4
(0.5)
P 		134.8
(0.3)
P 		154.5
(1.7)
P 		81
B 68.5
(-3)
P 		72
(-2.9)
A 		143.8
(-0.3)
P 		146.5
(-0.2)
P 		129.5
(-0.8)
P 		234.1
(3)
P 		166
C 58.4
(-3)
P 		123.4
(1.9)
M 		126.5
(2.2)
P 		130.7
(2.5)
P 		86.7
(-0.8)
P 		137.3
(3)
P 		79
avr 76.1
(-3) 		95.3
(-1.8) 		147.2
(1.3) 		138.5
(0.8) 		117
(-0.5) 		175.3
(3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 20.6
(2.2)
A 		12.5
(0.1)
A 		0.9
(-3)
A 		23.6
(3)
A 		23
B 16
(-0.5)
P 		1.6
(-2.9)
A 		1.2
(-3)
A 		36.6
(3)
P 		35
C 18.1
(0.1)
P 		0.6
(-3)
A 		11.3
(-1.1)
A 		34.5
(3)
P 		34
avr 18.2
(0) 		4.9
(-2.9) 		4.5
(-3) 		31.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 18.7
(-3)
A 		32.2
(0.7)
A 		37.3
(2.1)
P 		35.1
(1.5)
P 		40.7
(3)
P 		37.6
(2.2)
P 		22
B 23.8
(-3)
P 		24
(-3)
A 		34.9
(-2)
P 		38.8
(-1.6)
P 		52.6
(-0.3)
P 		87.3
(3)
P 		64
C 21.7
(-3)
P 		37.6
(0.9)
M 		32.2
(-0.4)
P 		26.3
(-1.9)
P 		28.1
(-1.4)
P 		46
(3)
P 		24
avr 21.4
(-3) 		31.3
(-1.3) 		34.8
(-0.7) 		33.4
(-1) 		40.5
(0.2) 		57
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14732
Sequence Type Exemplar sequence
Representative Public ID Y6E2A.5 NCBI
Target Description Y6E2A.5 /REP_DB=WormBase Gene ID /WP=CE20186 /TR=Q9XXT8 /GB=CAA15971.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074510(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074510 NCBI Caenorhabditis elegans Y6E2A.5 (Y6E2A.5) mRNA, complete cds. 11/11 None
SNAP00000013591 ENSEMBL cdna:SNAP chromosome:CEL140:V:15719003:15719622:-1 9/11 None
GENEFINDER00000013605 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15719003:15721242:-1 11/11 None
Y6E2A.5 ENSEMBL cdna:known chromosome:CEL140:V:15719003:15720544:-1 gene:Y6E2A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15719002-15720544(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y6E2A.5
Entrez Gene 189376 Entrez gene
SwissProt Q9XXT8 EMBL-EBI
WormBase CE20186 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15971 Hypothetical protein Y6E2A.5 [Caenorhabditis elegans] ref|NP_506911.1| Y6E2A.5 [Caenorhabditis elegans] 0.0
blast CAA15971 Hypothetical protein Y6E2A.5 [Caenorhabditis elegans] ref|NP_506911.1| Y6E2A.5 [Caenorhabditis elegans] 9.0E-95
blast CAE66295 Hypothetical protein CBG11544 [Caenorhabditis briggsae] 3.0E-43
blast CAE66295 Hypothetical protein CBG11544 [Caenorhabditis briggsae] 8.0E-43
blast CAE66296 Hypothetical protein CBG11545 [Caenorhabditis briggsae] 6.0E-33
blast CAE66296 Hypothetical protein CBG11545 [Caenorhabditis briggsae] 5.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 3.2E-101
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 1.5E-88
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 3.2E-101
Sequence
Target Sequence 
>C. ELEGANS:179428_AT
aggagtcgagagccagacttcaggctttcatggcatgtcttgaactaaaaatccgatggg
agcaacaagagcaagactggagtgattggttgaaggatacacgggctccattgataagaa
tcaagactaagtttactatgttttccagcaaatggaggcgaacagatgaggatgaaaata
aggaagaagctttatacatccaaaaccttgcacaagaagcctattatacattggtttttg
attttgaaatgctccaagagctagcctataagtacttggacaagcttttcctaaaagttt
tgcagaagcaaattagccaagtggcaacaaagctttgcaattttattgaagaactcggac
attatgagaacgataaagaatcctttgctagaatccagaatctggaatctcacatagatc
ccttagagattccgtcaactacgaagcttcgtcttatgtgtgaaactgagaaaattgaag
attattcagttgtggctccacctaaagtattgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGTCGAGAGCCAGACTTCAGGC 207 57 539 Antisense
GACTTCAGGCTTTCATGGCATGTCT 34 373 554 Antisense
GAAGGATACACGGGCTCCATTGATA 98 335 630 Antisense
GAAGCTTTATACATCCAAAACCTTG 211 341 724 Antisense
GAATCCTTTGCTAGAATCCAGAATC 234 329 916 Antisense
ATCTGGAATCTCACATAGATCCCTT 603 33 938 Antisense
TAGATCCCTTAGAGATTCCGTCAAC 186 651 953 Antisense
GATTCCGTCAACTACGAAGCTTCGT 518 433 966 Antisense
GAAGCTTCGTCTTATGTGTGAAACT 625 341 981 Antisense
AAGATTATTCAGTTGTGGCTCCACC 374 155 1016 Antisense
TTGTGGCTCCACCTAAAGTATTGAA 505 707 1028 Antisense
Sequence Source Affymetrix Proprietary Database