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[179426_at]

Description F27C8.3 /REP_DB=WormBase Gene ID /WP=CE03268 /TR=Q19836 /GB=CAA92461.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 14.2
(-1.9)
A 		2.6
(-3)
A 		16.2
(-1.7)
A 		64
(3)
A 		61
B 4.2
(-1.6)
A 		10.3
(3)
A 		2.4
(-3)
A 		3.1
(-2.5)
A 		8
C 5.2
(-2.4)
A 		3.7
(-2.7)
A 		2.4
(-3)
A 		29.8
(3)
A 		27
avr 7.9
(-2.5) 		5.5
(-3) 		7
(-2.7) 		32.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 9.7
(-0.3)
A 		8.8
(-0.7)
A 		18.4
(3)
A 		4.2
(-2.4)
A 		2.7
(-3)
A 		4.6
(-2.3)
A 		16
B 1.3
(-3)
A 		10.1
(3)
A 		4.7
(-0.7)
A 		9.8
(2.8)
A 		6.4
(0.5)
A 		2.8
(-2)
A 		9
C 21.9
(2.4)
A 		5.8
(-2.1)
A 		7.9
(-1.5)
A 		24.2
(3)
A 		2.6
(-3)
A 		3.6
(-2.7)
A 		22
avr 11
(1.9) 		8.2
(-0) 		10.3
(1.4) 		12.7
(3) 		3.9
(-2.9) 		3.7
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.2
(0.1)
A 		0.6
(-3)
A 		4.2
(-0.5)
A 		9.4
(3)
A 		9
B 1.4
(-0.5)
A 		2.5
(3)
A 		0.6
(-3)
A 		0.7
(-2.7)
A 		2
C 1.7
(-1.7)
A 		1.1
(-2.6)
A 		0.8
(-3)
A 		5
(3)
A 		4
avr 2.8
(-0.7) 		1.4
(-3) 		1.9
(-2.2) 		5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.8
(-1.1)
A 		3.1
(1.3)
A 		4
(3)
A 		1.1
(-2.4)
A 		0.8
(-3)
A 		1.1
(-2.4)
A 		3
B 0.5
(-3)
A 		3.4
(3)
A 		1.1
(-1.8)
A 		2.6
(1.3)
A 		2.6
(1.3)
A 		1
(-2)
A 		3
C 8.1
(3)
A 		1.8
(-2.2)
A 		2
(-2)
A 		4.9
(0.4)
A 		0.8
(-3)
A 		1.2
(-2.7)
A 		7
avr 3.5
(3) 		2.8
(1.3) 		2.4
(0.3) 		2.9
(1.5) 		1.4
(-2.3) 		1.1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10184
Sequence Type Exemplar sequence
Representative Public ID F27C8.3 NCBI
Target Description F27C8.3 /REP_DB=WormBase Gene ID /WP=CE03268 /TR=Q19836 /GB=CAA92461.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069304 NCBI Caenorhabditis elegans F27C8.3 (F27C8.3) mRNA, complete cds. 11/11 None
F27C8.3 ENSEMBL cdna:known chromosome:CEL140:IV:9594955:9595715:-1 gene:F27C8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022614 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9594960-9595721(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27C8.3
Entrez Gene 185014 Entrez gene
SwissProt Q19836 EMBL-EBI
WormBase CE03268 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92461 Hypothetical protein F27C8.3 [Caenorhabditis elegans] ref|NP_501705.1| F27C8.3 [Caenorhabditis elegans] 5.0E-57
Sequence
Target Sequence 
>C. ELEGANS:179426_AT
ggagagaggtcgattgatctattaaaaaataaaccctcgcatgataagtttgaagtgcaa
aagttatcaattacagagattttaaaaaacgtcgcaccaccggaaaaggggcttatcaca
cattccacagatcacggtaaagagctctgccacagaagagaaacaaatttgaagatattg
ccatacatgtcgcgaatacggagagcaatgaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAGAGGTCGATTGATCTATTAA 311 517 91 Antisense
ATTAAAAAATAAACCCTCGCATGAT 61 1 111 Antisense
ACCCTCGCATGATAAGTTTGAAGTG 390 89 123 Antisense
TCGCACCACCGGAAAAGGGGCTTAT 72 585 182 Antisense
GGAAAAGGGGCTTATCACACATTCC 694 527 192 Antisense
ATCACACATTCCACAGATCACGGTA 6 29 205 Antisense
GATCACGGTAAAGAGCTCTGCCACA 413 419 220 Antisense
GAGCTCTGCCACAGAAGAGAAACAA 443 387 232 Antisense
GAAGATATTGCCATACATGTCGCGA 455 337 261 Antisense
TTGCCATACATGTCGCGAATACGGA 646 701 268 Antisense
TCGCGAATACGGAGAGCAATGAACT 79 601 280 Antisense
Sequence Source Affymetrix Proprietary Database