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[179425_at]

Description C38D9.2 /REP_DB=WormBase Gene ID /WP=CE19728 /TR=Q9XVC4 /GB=CAB03948.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 58
(-3)
A 		89.4
(1.1)
A 		77.9
(-0.4)
A 		103.4
(3)
A 		45
B 51.1
(-1)
A 		99.3
(3)
A 		77.9
(1.2)
A 		26.9
(-3)
A 		72
C 55.1
(-3)
A 		107.8
(2.8)
A 		61.2
(-2.3)
A 		109.4
(3)
M 		54
avr 54.7
(-3) 		98.8
(3) 		72.3
(-0.6) 		79.9
(0.4) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 150.2
(0.2)
A 		141.1
(-0.1)
P 		63.6
(-3)
A 		225.3
(3)
P 		212.9
(2.5)
P 		112.9
(-1.2)
P 		162
B 112.3
(-1.6)
P 		104.5
(-2.4)
P 		98.3
(-3)
A 		159.9
(3)
P 		148.8
(1.9)
P 		97.9
(-3)
A 		62
C 143.5
(-0.7)
P 		132.8
(-1.1)
A 		107.3
(-2)
A 		122.8
(-1.4)
P 		250.8
(3)
P 		78
(-3)
P 		173
avr 135.3
(-0.6) 		126.1
(-1.1) 		89.7
(-3) 		169.3
(1.2) 		204.2
(3) 		96.3
(-2.7) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 21.1
(3)
A 		19.4
(1.3)
A 		20.4
(2.3)
A 		15.1
(-3)
A 		6
B 16.3
(0.4)
A 		24.5
(3)
A 		18.1
(1)
A 		5.7
(-3)
A 		19
C 18.2
(-3)
A 		31
(3)
A 		21.3
(-1.5)
A 		18.5
(-2.9)
M 		13
avr 18.5
(-0.3) 		25
(3) 		19.9
(0.4) 		13.1
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 27.7
(-1.4)
A 		50.2
(1.3)
P 		13.9
(-3)
A 		57.1
(2.2)
P 		64.2
(3)
P 		27.5
(-1.4)
P 		50
B 39.1
(-0.5)
P 		34.8
(-1.2)
P 		23.9
(-3)
A 		42.4
(0)
P 		60.4
(3)
P 		36.5
(-0.9)
A 		37
C 53.2
(0)
P 		40.5
(-1.3)
A 		27.3
(-2.7)
A 		24.7
(-3)
P 		81.2
(3)
P 		26.1
(-2.9)
P 		57
avr 40
(-0.7) 		41.8
(-0.4) 		21.7
(-3) 		41.4
(-0.5) 		68.6
(3) 		30
(-1.9) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14103
Sequence Type Exemplar sequence
Representative Public ID C38D9.2 NCBI
Target Description C38D9.2 /REP_DB=WormBase Gene ID /WP=CE19728 /TR=Q9XVC4 /GB=CAB03948.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075049(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075049 NCBI Caenorhabditis elegans C38D9.2 (C38D9.2) mRNA, complete cds. 11/11 None
SNAP00000039590 ENSEMBL cdna:SNAP chromosome:CEL140:V:17571956:17574252:1 11/11 None
GENEFINDER00000039599 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17569015:17574179:1 11/11 None
C38D9.2 ENSEMBL cdna:known chromosome:CEL140:V:17569015:17574179:1 gene:C38D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17569014-17574179(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38D9.2
Entrez Gene 183313 Entrez gene
SwissProt Q9XVC4 EMBL-EBI
WormBase CE19728 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03948 Hypothetical protein C38D9.2 [Caenorhabditis elegans] ref|NP_507450.1| C38D9.2 [Caenorhabditis elegans] 0.0
blast CAB02488 Hypothetical protein F15D4.5 [Caenorhabditis elegans] ref|NP_496806.2| F15D4.5 [Caenorhabditis elegans] 1.0E-161
blast CAB02488 Hypothetical protein F15D4.5 [Caenorhabditis elegans] ref|NP_496806.2| F15D4.5 [Caenorhabditis elegans] 1.0E-157
blast AAD32276 Hypothetical protein R09H3.3 [Caenorhabditis elegans] ref|NP_508307.1| R09H3.3 [Caenorhabditis elegans] 5.0E-14
blast AAD32276 Hypothetical protein R09H3.3 [Caenorhabditis elegans] ref|NP_508307.1| R09H3.3 [Caenorhabditis elegans] 6.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179425_AT
gctactcgtaccatcaaagttgcccacgaagccatgaactcacataaatattggaacgac
aataccaacgaaaccatcactcgccatctatacgaattcgcagccattgtcccacgaatg
gagaatgctgtgcaaaaacttaccggatactgtgcaagatacccacaagaagctctaggg
atgagatctgagaacgtggctccacaatggaaccattaccctcaacccccaccaaaggag
gctccaaaagaagcaattgaaactaccatcaagagaaccgagagtacctgcacattttgc
ggactgtacaaccacaccagcgagaaatgcaagaaattcttcacgtggttcgatcgacgc
gaaagactaaccgagatgaagaaatgccatcactgcttggaagtctacgagccagtcgaa
ttctgtggagctcaaatgcataccaactgcccaagcgaagacagtttctgtaaatattgc
aaggcactgagaggtacccaacgcggatggaaagacaccgcggcacaccatccagccgtg
tgtgagcatgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTACTCGTACCATCAAAGTTGCCC 643 301 1168 Antisense
CAAAGTTGCCCACGAAGCCATGAAC 59 193 1182 Antisense
AATACCAACGAAACCATCACTCGCC 281 173 1228 Antisense
GAGATCTGAGAACGTGGCTCCACAA 580 395 1350 Antisense
GAACCGAGAGTACCTGCACATTTTG 654 345 1442 Antisense
TTTTGCGGACTGTACAACCACACCA 43 675 1462 Antisense
TCTTCACGTGGTTCGATCGACGCGA 661 615 1505 Antisense
GGAAGTCTACGAGCCAGTCGAATTC 37 533 1566 Antisense
GCATACCAACTGCCCAAGCGAAGAC 367 309 1605 Antisense
CACTGAGAGGTACCCAACGCGGATG 710 137 1652 Antisense
CATCCAGCCGTGTGTGAGCATGCTC 549 211 1696 Antisense
Sequence Source Affymetrix Proprietary Database