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[179422_s_at]

Description M04C3.2 /REP_DB=WormBase Gene ID /WP=CE18079 /TR=O62319 /GB=CAB07266.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      4grp_high_8_8 > 40      6grp_total > 34      4grp_total > 55      6grp_high1_sub > 03      6grp_total_sub > Decrease      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 184.5
(3)
P 		63.8
(-2.9)
P 		84.3
(-1.9)
P 		62.1
(-3)
P 		122
B 167.6
(3)
P 		116.8
(0.5)
P 		89.5
(-0.8)
P 		45.6
(-3)
M 		122
C 237.3
(3)
P 		96.7
(-3)
P 		107.9
(-2.5)
P 		98.1
(-2.9)
P 		141
avr 196.5
(3) 		92.4
(-1.9) 		93.9
(-1.8) 		68.6
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 84.2
(0)
P 		120.6
(3)
P 		118.1
(2.8)
P 		57.5
(-2.1)
P 		46.8
(-3)
P 		73.2
(-0.9)
P 		74
B 104.7
(2.1)
P 		84.7
(0.6)
P 		117.7
(3)
P 		34.4
(-3)
A 		78.9
(0.2)
P 		47.6
(-2)
P 		83
C 94.5
(-0.4)
P 		141.2
(3)
P 		122.7
(1.7)
P 		72.7
(-1.9)
P 		58.1
(-3)
P 		65.6
(-2.5)
P 		83
avr 94.5
(0.7) 		115.5
(2.6) 		119.5
(3) 		54.9
(-3) 		61.3
(-2.4) 		62.1
(-2.3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 67.2
(3)
P 		13.9
(-2.5)
P 		22
(-1.7)
P 		9.1
(-3)
P 		58
B 53.4
(3)
P 		28.9
(-0.4)
P 		20.7
(-1.5)
P 		9.7
(-3)
M 		44
C 78.6
(3)
P 		27.8
(-1.9)
P 		37.6
(-1)
P 		16.5
(-3)
P 		62
avr 66.4
(3) 		23.5
(-1.7) 		26.8
(-1.4) 		11.8
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 15.5
(-2.7)
P 		42.9
(3)
P 		25.7
(-0.6)
P 		14.6
(-2.9)
P 		14.1
(-3)
P 		17.8
(-2.2)
P 		29
B 36.4
(3)
P 		28.2
(1.2)
P 		28.6
(1.3)
P 		9.1
(-3)
A 		32
(2)
P 		17.8
(-1.1)
P 		27
C 35
(1.3)
P 		43.1
(3)
P 		31.2
(0.5)
P 		14.6
(-3)
P 		18.8
(-2.1)
P 		22
(-1.4)
P 		29
avr 29
(0.8) 		38.1
(3) 		28.5
(0.7) 		12.8
(-3) 		21.6
(-0.9) 		19.2
(-1.5) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179422_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14695
Sequence Type Exemplar sequence
Representative Public ID M04C3.2 NCBI
Target Description M04C3.2 /REP_DB=WormBase Gene ID /WP=CE18079 /TR=O62319 /GB=CAB07266.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075383 NCBI Caenorhabditis elegans M04C3.2 (M04C3.2) mRNA, complete cds. 11/11 None
SNAP00000024082 ENSEMBL cdna:SNAP chromosome:CEL140:V:19449203:19451441:-1 11/11 None
GENEFINDER00000024083 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19441236:19451474:-1 11/11 None
M04C3.2 ENSEMBL cdna:known chromosome:CEL140:V:19448457:19451474:-1 gene:M04C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19448663-19450384(-) 100.0 100.0
chrV:19414216-19415379(-) 92.06 92.06
Public Domain and Genome References
Gene Title
Ensembl M04C3.2
Entrez Gene 180274 Entrez gene
SwissProt O62319 EMBL-EBI
WormBase CE31973 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07266 Hypothetical protein M04C3.2 [Caenorhabditis elegans] ref|NP_507784.2| M04C3.2 [Caenorhabditis elegans] 0.0
blast CAB03922 Hypothetical protein C25F9.4 [Caenorhabditis elegans] ref|NP_507778.3| C25F9.4 [Caenorhabditis elegans] 0.0
blast CAB07268 Hypothetical protein M04C3.1a [Caenorhabditis elegans] emb|CAB03924.1| Hypothetical protein M04C3.1a [Caenorhabditis elegans] ref|NP_507782.1| M04C3.1a [Caenorhabditis elegans] 0.0
blast CAD54148 Hypothetical protein M04C3.1b [Caenorhabditis elegans] emb|CAD54124.1| Hypothetical protein M04C3.1b [Caenorhabditis elegans] ref|NP_872172.1| M04C3.1b [Caenorhabditis elegans] 0.0
blast CAA21518 Hypothetical protein Y43F8B.14 [Caenorhabditis elegans] ref|NP_507785.1| Y43F8B.14 [Caenorhabditis elegans] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 3.2E-7
Sequence
Target Sequence 
>C. ELEGANS:179422_S_AT
caacaatctgttagccgcaataattagctacaccgaagagttctacatcaaacatttcaa
tatttctaccgaaagtgatgaagatatagaagaaatgtatgattcattttgtgctggtct
tcaggacccgtcgcatgtcggtcttattgtgaaagtatgggtggacgcgcactggaactt
ctccaaaagcgaacaagatcgtagtttcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAATCTGTTAGCCGCAATAATT 197 189 870 Antisense
GCCGCAATAATTAGCTACACCGAAG 552 283 883 Antisense
AATTAGCTACACCGAAGAGTTCTAC 314 173 891 Antisense
TCAAACATTTCAATATTTCTACCGA 501 629 917 Antisense
TTTTGTGCTGGTCTTCAGGACCCGT 315 673 976 Antisense
CCCGTCGCATGTCGGTCTTATTGTG 154 259 996 Antisense
GTCGCATGTCGGTCTTATTGTGAAA 332 475 999 Antisense
ATTGTGAAAGTATGGGTGGACGCGC 377 3 1015 Antisense
CGCGCACTGGAACTTCTCCAAAAGC 428 255 1035 Antisense
GGAACTTCTCCAAAAGCGAACAAGA 419 529 1043 Antisense
AAGCGAACAAGATCGTAGTTTCATT 10 141 1056 Antisense
Sequence Source Affymetrix Proprietary Database