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[179421_at]

Description T10H4.4 /REP_DB=WormBase Gene ID /WP=CE16389 /TR=O45775 /GB=CAB03334.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 21      6grp_total > 11      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 25.8
(-3)
P 		68.7
(0.4)
P 		28.2
(-2.8)
A 		101.9
(3)
P 		76
B 35.1
(-0.1)
A 		58
(3)
P 		14.3
(-3)
A 		53.7
(2.4)
M 		44
C 42.4
(-3)
P 		71.4
(0.6)
P 		47.7
(-2.3)
P 		91.3
(3)
P 		49
avr 34.4
(-2.5) 		66
(1.1) 		30.1
(-3) 		82.3
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 32.7
(-0.9)
A 		57.4
(3)
P 		44
(0.9)
P 		26.6
(-1.9)
A 		35.6
(-0.4)
A 		19.4
(-3)
A 		38
B 31.4
(-0.1)
M 		57.9
(3)
P 		37.9
(0.7)
P 		6.5
(-3)
A 		29.3
(-0.3)
P 		25.3
(-0.8)
P 		51
C 30.9
(-1.2)
A 		56.2
(1.8)
P 		36.3
(-0.6)
A 		66
(3)
P 		59.3
(2.2)
M 		16.4
(-3)
P 		50
avr 31.7
(-1.2) 		57.2
(3) 		39.4
(0.1) 		33
(-0.9) 		41.4
(0.4) 		20.4
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.4
(-1.4)
P 		14.9
(3)
P 		7.4
(-3)
A 		14.9
(3)
P 		8
B 11.2
(1.3)
A 		14.3
(3)
P 		3.3
(-3)
A 		11.4
(1.4)
M 		11
C 14
(-3)
P 		20.5
(3)
P 		16.6
(-0.6)
P 		15.4
(-1.7)
P 		7
avr 11.5
(-1.1) 		16.6
(3) 		9.1
(-3) 		13.9
(0.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6
(-2.5)
A 		20.4
(3)
P 		9.6
(-1.1)
P 		6.7
(-2.2)
A 		10.8
(-0.7)
A 		4.7
(-3)
A 		16
B 10.9
(0.1)
M 		19.3
(3)
P 		9.2
(-0.4)
P 		1.7
(-3)
A 		11.9
(0.5)
P 		9.4
(-0.4)
P 		18
C 11.5
(-0.4)
A 		17.2
(2.1)
P 		9.2
(-1.4)
A 		13.3
(0.4)
P 		19.2
(3)
M 		5.5
(-3)
P 		14
avr 9.5
(-1.6) 		19
(3) 		9.3
(-1.7) 		7.2
(-2.7) 		14
(0.6) 		6.5
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179421_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13343
Sequence Type Exemplar sequence
Representative Public ID T10H4.4 NCBI
Target Description T10H4.4 /REP_DB=WormBase Gene ID /WP=CE16389 /TR=O45775 /GB=CAB03334.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074380 NCBI Caenorhabditis elegans T10H4.4 (T10H4.4) mRNA, complete cds. 11/11 None
SNAP00000030476 ENSEMBL cdna:SNAP chromosome:CEL140:V:15272733:15276450:-1 11/11 None
GENEFINDER00000030485 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15268036:15274949:-1 9/11 None
T10H4.4 ENSEMBL cdna:known chromosome:CEL140:V:15272733:15274949:-1 gene:T10H4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15272732-15274949(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10H4.4
Entrez Gene 188393 Entrez gene
SwissProt O45775 EMBL-EBI
WormBase CE16389 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03334 Hypothetical protein T10H4.4 [Caenorhabditis elegans] ref|NP_506781.1| T10H4.4 [Caenorhabditis elegans] 0.0
blast AAK09079 Hypothetical protein Y92H12BR.7 [Caenorhabditis elegans] 4.0E-86
blast NP_490848 Y92H12BR.7 [Caenorhabditis elegans] 3.0E-82
blast AAK09079 Hypothetical protein Y92H12BR.7 [Caenorhabditis elegans] 2.0E-74
blast CAE69080 Hypothetical protein CBG15098 [Caenorhabditis briggsae] 3.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030476 1 16-38
Sequence
Target Sequence 
>C. ELEGANS:179421_AT
tggtcaaccaggcaatctcatcaatggaaaaatccacggacttttctttaccgctcagat
gtgccgtgggaaaccgccagattcttctccgttcggaaacatgcgaatggacctcaattg
tctggaaattttaaaccccgaaaagcacaacttctattttgcggacttctactgcaacag
ggaaatgcactatgtaactattgtgatttgtgttaataactctgaatctgataattactg
tcgtgaaaaccttatcgagttgaacccatttgccaacaactttctaattattgaacgctc
aactaacgataaattcagtagatggaaatttttcgttaattttgcagtgagagttgaact
cttttacacagaaaacttaacattagactccgggaatctcactgaaatcactgcaactgg
agcaggtacttctcgagctaatggtttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCAACCAGGCAATCTCATCAAT 162 553 1149 Antisense
CGGACTTTTCTTTACCGCTCAGATG 120 243 1185 Antisense
GCTCAGATGTGCCGTGGGAAACCGC 690 299 1201 Antisense
GATTCTTCTCCGTTCGGAAACATGC 161 431 1228 Antisense
GCGAATGGACCTCAATTGTCTGGAA 151 289 1251 Antisense
GCACAACTTCTATTTTGCGGACTTC 463 315 1293 Antisense
TGCGGACTTCTACTGCAACAGGGAA 216 579 1308 Antisense
GAACCCATTTGCCAACAACTTTCTA 442 345 1410 Antisense
GACTCCGGGAATCTCACTGAAATCA 662 373 1534 Antisense
GCAACTGGAGCAGGTACTTCTCGAG 705 319 1561 Antisense
GTACTTCTCGAGCTAATGGTTTGCC 103 459 1574 Antisense
Sequence Source Affymetrix Proprietary Database