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[179420_at]

Description T09F5.2 /REP_DB=WormBase Gene ID /WP=CE13523 /TR=O62373 /GB=CAB05802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 46.7
(-3)
A 		110.8
(3)
A 		46.3
(-3)
A 		77
(-0.1)
A 		65
B 63.9
(2.8)
A 		31.7
(-1.5)
A 		20.1
(-3)
A 		65.3
(3)
P 		45
C 23.1
(-2.4)
A 		11.2
(-3)
A 		39.8
(-1.6)
A 		137.8
(3)
P 		127
avr 44.6
(-2) 		51.2
(-1.4) 		35.4
(-3) 		93.4
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 98.3
(0.5)
A 		34.3
(-3)
A 		104.2
(0.8)
A 		53.3
(-2)
A 		77.3
(-0.7)
P 		145.3
(3)
P 		111
B 43.8
(-1.4)
A 		60.6
(-0.5)
A 		20.3
(-2.7)
A 		14
(-3)
A 		74
(0.2)
P 		125.9
(3)
P 		112
C 73.7
(-1.1)
A 		91.3
(-0.5)
A 		62.7
(-1.4)
A 		14.7
(-3)
A 		77.5
(-0.9)
P 		198.4
(3)
P 		184
avr 71.9
(-0.9) 		62.1
(-1.4) 		62.4
(-1.4) 		27.3
(-3) 		76.3
(-0.7) 		156.5
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 17
(-0.3)
A 		24
(3)
A 		12.1
(-2.6)
A 		11.3
(-3)
A 		13
B 20.4
(3)
A 		7.8
(-1.8)
A 		4.7
(-3)
A 		13.9
(0.5)
P 		16
C 7.7
(-1.7)
A 		3.2
(-3)
A 		13.9
(0.2)
A 		23.2
(3)
P 		20
avr 15
(1.9) 		11.7
(-1.5) 		10.2
(-3) 		16.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 18.1
(-1.5)
A 		12.2
(-3)
A 		22.7
(-0.3)
A 		13.5
(-2.7)
A 		23.3
(-0.1)
P 		35.4
(3)
P 		23
B 15.3
(-1.4)
A 		20.2
(-0.7)
A 		4.9
(-2.8)
A 		3.7
(-3)
A 		30.1
(0.7)
P 		47
(3)
P 		43
C 27.3
(-0.7)
A 		27.9
(-0.6)
A 		16
(-1.8)
A 		2.9
(-3)
A 		25.1
(-0.9)
P 		66.4
(3)
P 		64
avr 20.2
(-1.1) 		20.1
(-1.1) 		14.5
(-1.9) 		6.7
(-3) 		26.2
(-0.3) 		49.6
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13594
Sequence Type Exemplar sequence
Representative Public ID T09F5.2 NCBI
Target Description T09F5.2 /REP_DB=WormBase Gene ID /WP=CE13523 /TR=O62373 /GB=CAB05802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074337 NCBI Caenorhabditis elegans T09F5.2 (T09F5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000036452 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15153547:15154224:1 11/11 None
T09F5.2 ENSEMBL cdna:known chromosome:CEL140:V:15153547:15154224:1 gene:T09F5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15153546-15154224(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09F5.2
Entrez Gene 188342 Entrez gene
SwissProt O62373 EMBL-EBI
WormBase CE13523 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05802 Hypothetical protein T09F5.2 [Caenorhabditis elegans] ref|NP_506738.1| T09F5.2 [Caenorhabditis elegans] 1.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506738.1 1 33-55
T09F5.2 1 33-55
GENEFINDER00000036452 1 33-55
Sequence
Target Sequence 
>C. ELEGANS:179420_AT
gacttcatttttcatcggtttcacagttagtgcggtttttgttttgattgcatttggagt
ttcttttatctatttcgctcaatacgatcgtacagtgaaaataataccaaaagaacttga
gaaatccagccgaaaatcatctctacctaattcttctgaaataccatcaactatttcagt
tgaaacgactacgaagactacaaacttagagccttcatccatttctccagctccagacaa
aactgagcctacctcgtctgaacttccaccaactatcacaaaagaacttacagcagcgat
ttcacgttcagagccttcaactagtactccagctccaacaattttatatccggcaccacc
agttgcgatacaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTCATTTTTCATCGGTTTCACA 669 369 102 Antisense
GTTTCTTTTATCTATTTCGCTCAAT 139 451 160 Antisense
ATCCAGCCGAAAATCATCTCTACCT 103 41 225 Antisense
CATCTCTACCTAATTCTTCTGAAAT 171 213 239 Antisense
AACTTAGAGCCTTCATCCATTTCTC 346 139 304 Antisense
CATTTCTCCAGCTCCAGACAAAACT 506 215 321 Antisense
AGACAAAACTGAGCCTACCTCGTCT 570 71 336 Antisense
TCTGAACTTCCACCAACTATCACAA 110 609 358 Antisense
ACAGCAGCGATTTCACGTTCAGAGC 52 109 391 Antisense
CAGAGCCTTCAACTAGTACTCCAGC 211 205 410 Antisense
CGGCACCACCAGTTGCGATACAAAA 101 243 452 Antisense
Sequence Source Affymetrix Proprietary Database