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[179418_at]

Description Y6E2A.3 /REP_DB=WormBase Gene ID /WP=CE16580 /TR=O45970 /GB=CAA15964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      6grp_highest_nonorm > 95      6grp_total > 96      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1091
1 2 3 4 range
A 113.6
(-2.6)
P 		63.4
(-2.9)
A 		39.2
(-3)
A 		1126
(3)
P 		1087
B 92.4
(-2.9)
P 		114.6
(-2.8)
A 		80.9
(-3)
A 		1103.7
(3)
P 		1023
C 97.9
(-2.6)
P 		119.8
(-2.5)
A 		35
(-3)
A 		995
(3)
P 		960
avr 101.3
(-2.7) 		99.3
(-2.7) 		51.7
(-3) 		1074.9
(3) 		1023

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1595
1 2 3 4 5 6 range
A 137.3
(-3)
P 		129.5
(-3)
P 		291.1
(-2.4)
P 		918.5
(-0)
P 		1232.3
(1.2)
P 		1722.5
(3)
P 		1593
B 140
(-2.9)
P 		127.4
(-3)
P 		240.1
(-2.5)
P 		822.6
(-0.2)
P 		1350.4
(1.9)
P 		1620.9
(3)
P 		1494
C 136.4
(-3)
P 		179.3
(-2.8)
P 		299.7
(-2.3)
P 		819.6
(-0.1)
P 		1087.6
(1.1)
P 		1545.3
(3)
P 		1409
avr 137.9
(-3) 		145.4
(-3) 		277
(-2.4) 		853.6
(-0.1) 		1223.4
(1.4) 		1629.6
(3) 		1492
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 41.4
(-1.8)
P 		13.8
(-2.9)
A 		10.2
(-3)
A 		164.8
(3)
P 		155
B 29.5
(-2.7)
P 		28.3
(-2.7)
A 		18.8
(-3)
A 		235.2
(3)
P 		216
C 32.4
(-2.2)
P 		34.4
(-2.1)
A 		12.2
(-3)
A 		167.8
(3)
P 		156
avr 34.4
(-2.3) 		25.5
(-2.6) 		13.7
(-3) 		189.3
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 579
1 2 3 4 5 6 range
A 25.3
(-3)
P 		46.1
(-2.7)
P 		63.4
(-2.4)
P 		233
(0.2)
P 		371.9
(2.3)
P 		419.4
(3)
P 		394
B 48.7
(-2.9)
P 		42.4
(-3)
P 		58.3
(-2.8)
P 		217.9
(-1.1)
P 		548.7
(2.4)
P 		604.4
(3)
P 		562
C 50.5
(-3)
P 		54.7
(-2.9)
P 		76.3
(-2.7)
P 		164.8
(-1.5)
P 		351.9
(0.9)
P 		517.3
(3)
P 		467
avr 41.5
(-3) 		47.7
(-2.9) 		66
(-2.7) 		205.2
(-0.9) 		424.2
(1.9) 		513.7
(3) 		472
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179418_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14509
Sequence Type Exemplar sequence
Representative Public ID Y6E2A.3 NCBI
Target Description Y6E2A.3 /REP_DB=WormBase Gene ID /WP=CE16580 /TR=O45970 /GB=CAA15964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074509(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074509 NCBI Caenorhabditis elegans Y6E2A.4 (Y6E2A.4) mRNA, complete cds. 10/11 A 
SNAP00000013590 ENSEMBL cdna:SNAP chromosome:CEL140:V:15714832:15718228:-1 11/11 None
Y6E2A.4 ENSEMBL cdna:known chromosome:CEL140:V:15714832:15718228:-1 gene:Y6E2A.4 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013598 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013604 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15714831-15716268(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y6E2A.4
Entrez Gene 189374 Entrez gene
SwissProt O45969 EMBL-EBI
WormBase CE31125 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15963 Hypothetical protein Y6E2A.4 [Caenorhabditis elegans] ref|NP_506910.2| Y6E2A.4 [Caenorhabditis elegans] 0.0
blast T27331 hypothetical protein Y6E2A.3 - Caenorhabditis elegans 7.0E-95
blast T27331 hypothetical protein Y6E2A.3 - Caenorhabditis elegans 2.0E-87
blast CAE66299 Hypothetical protein CBG11548 [Caenorhabditis briggsae] 5.0E-81
blast CAE66299 Hypothetical protein CBG11548 [Caenorhabditis briggsae] 6.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 9.9E-12
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:179418_AT
aattgctcaattcctctctgaaatcatttcactgggaagaacacgaagagtactgggcca
gtcgattgaacgttcttcgtaactcactgtcgcttattcgttccgaattttggagttttg
agagatatttccggcagcaggcagagaatccagagatgtgtccgaattttatggaatcag
cctcgttcggccagacagtcaccagagctcagacccttatcagtaaccagcacgagtttt
tcgatgtgctcttcgataaatacgacgatgatttgtttttgaaagtgctttggaaagcca
cgagtcaagtggccaatcagctcgacaaaataatttttgaattatggagcatcgcggtga
actctcatggatacgactactttaagcttcggtcagcagtgatggaagttgacccatcgt
caattccgaccacatggaggctcaaaggaatctgtcactcagctgatccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCTCAATTCCTCTCTGAAATC 575 177 140 Antisense
ACTGGGCCAGTCGATTGAACGTTCT 498 97 191 Antisense
TGAACGTTCTTCGTAACTCACTGTC 552 573 206 Antisense
TCACTGTCGCTTATTCGTTCCGAAT 231 625 223 Antisense
TTATGGAATCAGCCTCGTTCGGCCA 527 681 308 Antisense
CCAGACAGTCACCAGAGCTCAGACC 472 271 330 Antisense
TCAGACCCTTATCAGTAACCAGCAC 704 609 348 Antisense
GAGTCAAGTGGCCAATCAGCTCGAC 286 399 441 Antisense
GCATCGCGGTGAACTCTCATGGATA 609 309 488 Antisense
GTCAATTCCGACCACATGGAGGCTC 338 463 558 Antisense
GAATCTGTCACTCAGCTGATCCATC 169 329 587 Antisense
Sequence Source Affymetrix Proprietary Database