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[179417_at]

Description F56D5.6 /REP_DB=WormBase Gene ID /WP=CE28037 /TR=Q20881 /GB=CAA93500.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 40      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_total > 52      4grp_total > 61      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 169.3
(3)
P 		88.7
(-1.7)
P 		88.4
(-1.7)
P 		65.8
(-3)
P 		104
B 112.9
(2)
P 		131.6
(3)
P 		112.3
(1.9)
P 		24.2
(-3)
P 		107
C 169.1
(3)
P 		127.3
(0.7)
P 		142.5
(1.5)
P 		60.8
(-3)
P 		108
avr 150.4
(3) 		115.9
(0.9) 		114.4
(0.8) 		50.3
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 97.2
(-3)
A 		183.2
(-1.1)
P 		370.9
(3)
P 		250.9
(0.4)
P 		149
(-1.9)
P 		108.2
(-2.8)
P 		274
B 191.6
(-1.8)
P 		180.3
(-2.3)
P 		314.3
(3)
P 		182.2
(-2.2)
P 		166.1
(-2.8)
P 		161.5
(-3)
P 		153
C 189.7
(0.7)
P 		191.4
(0.8)
P 		223.4
(3)
P 		197.2
(1.2)
P 		173.1
(-0.4)
P 		134.1
(-3)
P 		89
avr 159.5
(-2.1) 		185
(-1.2) 		302.9
(3) 		210.1
(-0.3) 		162.7
(-2) 		134.6
(-3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 61.6
(3)
P 		19.3
(-1.9)
P 		23.1
(-1.4)
P 		9.6
(-3)
P 		52
B 36
(3)
P 		32.5
(2.3)
P 		26
(1.1)
P 		5.2
(-3)
P 		31
C 56
(3)
P 		36.6
(0.5)
P 		49.7
(2.2)
P 		10.2
(-3)
P 		46
avr 51.2
(3) 		29.5
(-0) 		32.9
(0.4) 		8.3
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 17.9
(-3)
A 		65.1
(1.5)
P 		80.8
(3)
P 		63.6
(1.4)
P 		45
(-0.4)
P 		26.3
(-2.2)
P 		63
B 66.7
(0.9)
P 		60
(-0.5)
P 		76.3
(3)
P 		48.3
(-3)
P 		67.5
(1.1)
P 		60.2
(-0.4)
P 		28
C 70.3
(3)
P 		58.4
(0.7)
P 		56.9
(0.4)
P 		39.7
(-3)
P 		56
(0.2)
P 		44.9
(-2)
P 		31
avr 51.6
(-1.3) 		61.2
(0.8) 		71.3
(3) 		50.5
(-1.5) 		56.2
(-0.3) 		43.8
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8437
Sequence Type Exemplar sequence
Representative Public ID F56D5.6 NCBI
Target Description F56D5.6 /REP_DB=WormBase Gene ID /WP=CE28037 /TR=Q20881 /GB=CAA93500.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069257(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069257 NCBI Caenorhabditis elegans F56D5.6 (F56D5.6) mRNA, complete cds. 9/11 None
SNAP00000006180 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9405184:9409426:1 9/11 None
GENEFINDER00000006194 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9408733:9409959:1 9/11 None
F56D5.6 ENSEMBL cdna:known chromosome:CEL140:IV:9401966:9412630:1 gene:F56D5.6 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9406722-9409432(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D5.6
Entrez Gene 177773 Entrez gene
SwissProt Q20881 EMBL-EBI
WormBase CE33797 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93500 Hypothetical protein F56D5.6 [Caenorhabditis elegans] ref|NP_501658.2| F56D5.6 [Caenorhabditis elegans] 0.0
blast CAA93500 Hypothetical protein F56D5.6 [Caenorhabditis elegans] ref|NP_501658.2| F56D5.6 [Caenorhabditis elegans] 2.0E-85
blast CAE74007 Hypothetical protein CBG21650 [Caenorhabditis briggsae] 3.0E-37
blast CAE74007 Hypothetical protein CBG21650 [Caenorhabditis briggsae] 2.0E-22
blast CAE74007 Hypothetical protein CBG21650 [Caenorhabditis briggsae] 5.0E-22
blast NP_703434 hypothetical protein [Plasmodium falciparum 3D7] emb|CAD51454.1| hypothetical protein [Plasmodium falciparum 3D7] 1.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501658.2 1 7-28
F56D5.6 1 7-28
Sequence
Target Sequence 
>C. ELEGANS:179417_AT
aaacttgattatacggattctggtcattataccaagtagcaagatagaattggcaatttc
aagagacgaagttgatgaaagcaataaatcagcagatgaagttgaaaaagaagttcaaac
tggaaatcaagatgatgggaatagtgaacaatcttctgatttaccaaagaatcgagatcg
tatcgatactgattcggctgtggaagaagttggtgagccagagaagaataatgacaatgt
ggaagaagtgaacgaaagtgggaacgtaattttagatgaggatgaaaacatcgaagacaa
cgtcgagttagcaagagattttggaaaagcaatttatgagaatgttatgataaaggctaa
ggagattgatgaaattgaaacagaatccgaagttcaagattccgacgtaggagatgtaga
tccaaatgccatcaatgtcgaatcagaaattgctgattctccagaagagagtgtagttga
cgcagacaatttggacggtgttgttcttcctgatcagacccttactgatgaggagatagc
aaagatcgctgatgagagtttgaagccaattcaaccagcaggtaaccagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTGATTATACGGATTCTGGTC 444 127 168 Antisense
ACGGATTCTGGTCATTATACCAAGT 555 93 180 Antisense
GTGAACAATCTTCTGATTTACCAAA 136 483 311 Antisense
GATCGTATCGATACTGATTCGGCTG 58 419 343 Antisense
GATTCGGCTGTGGAAGAAGTTGGTG 210 433 358 Antisense
GAAGACAACGTCGAGTTAGCAAGAG 676 337 460 Antisense
ATCCGAAGTTCAAGATTCCGACGTA 449 37 552 Antisense
GTAGATCCAAATGCCATCAATGTCG 703 455 583 Antisense
ATGCCATCAATGTCGAATCAGAAAT 344 41 593 Antisense
AAGAGAGTGTAGTTGACGCAGACAA 569 153 632 Antisense
CAATTCAACCAGCAGGTAACCAGAA 148 179 734 Antisense
Sequence Source Affymetrix Proprietary Database