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[179416_at]

Description ZK550.3 /REP_DB=WormBase Gene ID /WP=CE16734 /TR=O62512 /GB=CAB05313.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 21      6grp_total > 25      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1566
1 2 3 4 range
A 1532.5
(2.9)
P 		1291.3
(1.3)
P 		1541.2
(3)
P 		634.4
(-3)
P 		907
B 1529
(2.7)
P 		1576.1
(3)
P 		1552.8
(2.9)
P 		594.3
(-3)
P 		982
C 1502.1
(1.1)
P 		2010.8
(3)
P 		1954.4
(2.8)
P 		444.8
(-3)
P 		1566
avr 1521.2
(2.1) 		1626.1
(2.7) 		1682.8
(3) 		557.8
(-3) 		1125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 792
1 2 3 4 5 6 range
A 1248
(2.1)
P 		1310.6
(3)
P 		953.5
(-2.4)
P 		911.8
(-3)
P 		1056.3
(-0.8)
P 		948
(-2.5)
P 		399
B 1457
(2.7)
P 		1485.2
(3)
P 		1281
(0.5)
P 		1347.5
(1.3)
P 		986.5
(-3)
P 		1051.1
(-2.2)
P 		499
C 1704.2
(3)
P 		1505.7
(1.2)
P 		1345.1
(-0.2)
P 		1199.2
(-1.5)
P 		1037.4
(-3)
P 		1123.1
(-2.2)
P 		667
avr 1469.7
(3) 		1433.8
(2.5) 		1193.2
(-0.7) 		1152.8
(-1.3) 		1026.7
(-3) 		1040.7
(-2.8) 		443
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 606
1 2 3 4 range
A 558
(3)
P 		280.3
(-0.6)
P 		402.9
(1)
P 		92.9
(-3)
P 		465
B 487.6
(3)
P 		389.2
(1.4)
P 		359.8
(0.9)
P 		126.7
(-3)
P 		361
C 497.2
(1.2)
P 		578.1
(2)
P 		681.2
(3)
P 		75
(-3)
P 		606
avr 514.3
(3) 		415.9
(1.6) 		481.3
(2.5) 		98.2
(-3) 		416

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 424
1 2 3 4 5 6 range
A 230.1
(-2.5)
P 		466.1
(3)
P 		207.7
(-3)
P 		231.3
(-2.5)
P 		318.7
(-0.4)
P 		230.8
(-2.5)
P 		258
B 507
(3)
P 		494.4
(2.6)
P 		311.1
(-3)
P 		356.9
(-1.6)
P 		400.8
(-0.3)
P 		391.9
(-0.5)
P 		196
C 631.7
(3)
P 		459.4
(0.4)
P 		342.4
(-1.4)
P 		241.2
(-3)
P 		335.7
(-1.5)
P 		376
(-0.9)
P 		391
avr 456.3
(2.5) 		473.3
(3) 		287.1
(-2.7) 		276.5
(-3) 		351.7
(-0.7) 		332.9
(-1.3) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9654
Sequence Type Exemplar sequence
Representative Public ID ZK550.3 NCBI
Target Description ZK550.3 /REP_DB=WormBase Gene ID /WP=CE16734 /TR=O62512 /GB=CAB05313.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070658 NCBI Caenorhabditis elegans ZK550.3 (ZK550.3) mRNA, complete cds. 11/11 None
SNAP00000029245 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17250263:17254708:1 11/11 None
GENEFINDER00000029248 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17249844:17254708:1 11/11 None
ZK550.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:17250084:17254903:1 gene:ZK550.3 11/11 None
ZK550.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:17250086:17254903:1 gene:ZK550.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17250093-17254714(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK550.3
Entrez Gene 178501 Entrez gene
SwissProt O62512 EMBL-EBI
WormBase CE37464 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05313 Hypothetical protein ZK550.3 [Caenorhabditis elegans] ref|NP_503059.2| ZK550.3 [Caenorhabditis elegans] 0.0
blast CAE57411 Hypothetical protein CBG00366 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001567 EMBL-EBI Peptidase M3A and M3B, thimet/oligopeptidase F 1.0E-126
Pfam IPR001567 EMBL-EBI Peptidase M3A and M3B, thimet/oligopeptidase F 1.0E-126
Pfam IPR001567 EMBL-EBI Peptidase M3A and M3B, thimet/oligopeptidase F 1.1E-28
Pfam IPR001567 EMBL-EBI Peptidase M3A and M3B, thimet/oligopeptidase F 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029248 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:179416_AT
tctccattctacgcatctgactgggatgcagctgacatgttcccaacattcttgcaaatg
ttcgtcacgaagcccaatctccttgcaacaattagctctccgcatcagatcacaaagcaa
tcgttgaccgaagagcacgcaaactcggtggctcttacgatctcacgagcatcactctgg
gaaacctaccgtaccctcttctggtcggactttgatctgtcgatttacgagatggaggac
aggaagcaaaagttctggctggatatgtacaaacaaatgtatgaggagtatttcccgttc
aaaagagccaaaaatgactatcaaccgtgctcattcacaccgatttttgctcttcaacca
catatgagcatgtattataggaagctgtgggctgagatgctcgccttagatatccatgag
acatttgacgaggaagacaatgaagtgcaaacgggagaacgattgaaaacgacaatattg
aatagaggaagtggagatgttgcgaaggaattgttcaaaagattccagggccgaaatcca
tcagtcggagccatctgtgatcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCATTCTACGCATCTGACTGGG 359 609 1852 Antisense
GCAGCTGACATGTTCCCAACATTCT 535 313 1879 Antisense
GCCCAATCTCCTTGCAACAATTAGC 188 287 1923 Antisense
AGCTCTCCGCATCAGATCACAAAGC 172 81 1945 Antisense
CAAACTCGGTGGCTCTTACGATCTC 501 189 1991 Antisense
GATCTCACGAGCATCACTCTGGGAA 163 419 2010 Antisense
GTGCTCATTCACACCGATTTTTGCT 628 477 2178 Antisense
GATTTTTGCTCTTCAACCACATATG 665 427 2193 Antisense
GGAAGCTGTGGGCTGAGATGCTCGC 330 531 2231 Antisense
AGATGCTCGCCTTAGATATCCATGA 441 67 2246 Antisense
TCAGTCGGAGCCATCTGTGATCACT 629 613 2392 Antisense
Sequence Source Affymetrix Proprietary Database