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[179415_at]

Description F47B8.9 /REP_DB=WormBase Gene ID /WP=CE10648 /TR=Q20527 /GB=CAB01202.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 14      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 86.5
(3)
A 		13.5
(-2.8)
A 		10.7
(-3)
A 		74.1
(2)
A 		76
B 105
(2.8)
A 		40
(-2.3)
A 		31.4
(-3)
A 		107
(3)
A 		76
C 95
(-1.2)
A 		57
(-2.6)
A 		45.9
(-3)
A 		206.3
(3)
A 		160
avr 95.5
(1) 		36.8
(-2.5) 		29.3
(-3) 		129.1
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 87.6
(3)
A 		25.5
(-3)
A 		69.5
(1.3)
A 		43.5
(-1.3)
A 		44.6
(-1.2)
A 		74.1
(1.7)
A 		62
B 109.2
(3)
P 		76.9
(0.4)
A 		46
(-2.2)
A 		35.8
(-3)
A 		48.6
(-2)
A 		43
(-2.4)
A 		73
C 87.3
(3)
A 		87.3
(3)
A 		7
(-3)
A 		44
(-0.2)
A 		14.7
(-2.4)
A 		26.3
(-1.6)
A 		80
avr 94.7
(3) 		63.2
(-0.2) 		40.8
(-2.5) 		41.1
(-2.5) 		36
(-3) 		47.8
(-1.8) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 31.5
(3)
A 		2.9
(-3)
A 		2.8
(-3)
A 		10.9
(-1.3)
A 		29
B 33.5
(3)
A 		9.9
(-2.4)
A 		7.3
(-3)
A 		22.8
(0.5)
A 		26
C 31.4
(1.9)
A 		16.4
(-2.9)
A 		16
(-3)
A 		34.8
(3)
A 		19
avr 32.1
(3) 		9.7
(-2.7) 		8.7
(-3) 		22.8
(0.6) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 16.1
(1.7)
A 		9.1
(-3)
A 		15.1
(1)
A 		11
(-1.7)
A 		13.5
(-0.1)
A 		18.1
(3)
A 		9
B 38
(3)
P 		25.6
(0.4)
A 		11.2
(-2.6)
A 		9.5
(-3)
A 		19.7
(-0.9)
A 		16
(-1.6)
A 		29
C 32.4
(3)
A 		26.6
(1.9)
A 		1.8
(-3)
A 		8.9
(-1.6)
A 		4.8
(-2.4)
A 		8.8
(-1.6)
A 		31
avr 28.8
(3) 		20.4
(0.4) 		9.4
(-3) 		9.8
(-2.9) 		12.7
(-2) 		14.3
(-1.5) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179415_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14040
Sequence Type Exemplar sequence
Representative Public ID F47B8.9 NCBI
Target Description F47B8.9 /REP_DB=WormBase Gene ID /WP=CE10648 /TR=Q20527 /GB=CAB01202.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074154(11), NM_182385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074154 NCBI Caenorhabditis elegans Serpentine Receptor, class M family member (srm-6) (srm-6) mRNA, complete cds. 11/11 None
NM_182385 NCBI Caenorhabditis elegans Serpentine Receptor, class M family member (srm-6) (srm-6) mRNA, complete cds. 11/11 None
SNAP00000011444 ENSEMBL cdna:SNAP chromosome:CEL140:V:14339637:14341301:1 11/11 None
GENEFINDER00000011448 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14339637:14341301:1 11/11 None
F47B8.9b ENSEMBL cdna:known chromosome:CEL140:V:14337817:14341385:1 gene:F47B8.9 11/11 None
F47B8.9a ENSEMBL cdna:known chromosome:CEL140:V:14337817:14341396:1 gene:F47B8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14337816-14341301(+) 100.0 100.0
Public Domain and Genome References
Ensembl F47B8.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE60918 Hypothetical protein CBG04635 [Caenorhabditis briggsae] 0.0
blast CAB01202 Hypothetical protein F47B8.9a [Caenorhabditis elegans] ref|NP_506555.2| Serpentine Receptor, class M family member (srm-6) [Caenorhabditis elegans] 1.0E-177
blast CAE60918 Hypothetical protein CBG04635 [Caenorhabditis briggsae] 1.0E-165
blast CAI70418 Hypothetical protein F47B8.12 [Caenorhabditis elegans] ref|NP_001023942.1| Serpentine Receptor, class M family member (srm-5) [Caenorhabditis elegans] 1.0E-153
blast CAB01202 Hypothetical protein F47B8.9a [Caenorhabditis elegans] ref|NP_506555.2| Serpentine Receptor, class M family member (srm-6) [Caenorhabditis elegans] 1.0E-150
blast CAD54139 Hypothetical protein F47B8.9b [Caenorhabditis elegans] ref|NP_872185.2| Serpentine Receptor, class M family member (srm-6) [Caenorhabditis elegans] 1.0E-130
blast CAD54139 Hypothetical protein F47B8.9b [Caenorhabditis elegans] ref|NP_872185.2| Serpentine Receptor, class M family member (srm-6) [Caenorhabditis elegans] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506555.2 8 21-43,58-80,92-114,143-165,172-194,204-226,252-274,284-306
NP_872185.2 6 21-43,58-80,92-114,143-165,172-194,204-226
F47B8.9b 11 41-60,81-103,118-140,161-183,227-249,274-296,311-333,354-376,391-413,434-456,500-522
F47B8.9a 13 41-60,81-103,118-140,161-183,227-249,274-296,311-333,354-376,391-413,434-456,500-522,548-570,580-602
SNAP00000011444 8 21-43,58-80,92-114,143-165,172-194,204-226,252-274,284-306
GENEFINDER00000011448 8 21-43,58-80,92-114,143-165,172-194,204-226,252-274,284-306
Sequence
Target Sequence 
>C. ELEGANS:179415_AT
agttcatccttcgcatgcagtaataattattatcatcaatctgtttttcctctccctcag
ttcgggagttctttgttattcttcatatccagtaattgatgacgtcatcaatctgagcgg
aattgctgtgtcctatgttggacatgaaacttcgttccttgttctttcagttgataaaac
agctacttcgatatcagcatacgtttccagtatcacgtacgtctcgatactgctagtagc
cgtggtggctatgatatttttctactttaaaatcaactctaaaatgaactcaaatcttaa
catgagtgaaaatttgaagaaaatgcagaagcaagcaaatcagattttgactatgcagtt
catattgacactcatcttcattcaacttccattcttctattcggtacttggtccattggc
tggactttctcagaaacttgccacatatcttctatcaattctttttgtttggggtcccgt
tatcaacacagtcagcatattcgtcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCATCCTTCGCATGCAGTAATA 440 63 1311 Antisense
TTATCATCAATCTGTTTTTCCTCTC 466 679 1340 Antisense
TTCCTCTCCCTCAGTTCGGGAGTTC 73 699 1357 Antisense
TCGTTCCTTGTTCTTTCAGTTGATA 178 603 1462 Antisense
GTTTCCAGTATCACGTACGTCTCGA 298 451 1513 Antisense
ACGTCTCGATACTGCTAGTAGCCGT 415 95 1529 Antisense
AACTTCCATTCTTCTATTCGGTACT 586 133 1694 Antisense
TTCGGTACTTGGTCCATTGGCTGGA 403 691 1710 Antisense
GAAACTTGCCACATATCTTCTATCA 294 357 1743 Antisense
TGTTTGGGGTCCCGTTATCAACACA 610 501 1776 Antisense
AACACAGTCAGCATATTCGTCTTCA 522 135 1795 Antisense
Sequence Source Affymetrix Proprietary Database