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[179413_at]

Description K06A4.4 /REP_DB=WormBase Gene ID /WP=CE06108 /TR=Q21254 /GB=CAA94783.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 57      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 97.1
(-2.1)
A 		179.8
(0.5)
A 		262.3
(3)
A 		66.9
(-3)
A 		195
B 61.8
(-1.7)
A 		235.3
(2.5)
A 		257.3
(3)
A 		7.8
(-3)
A 		250
C 56.6
(-3)
A 		193.8
(0.8)
A 		270.8
(3)
P 		89.8
(-2.1)
A 		214
avr 71.8
(-2.5) 		203
(1.3) 		263.5
(3) 		54.8
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 59.1
(-3)
A 		187.7
(1.4)
A 		234.3
(3)
A 		163.8
(0.6)
A 		196.2
(1.7)
A 		182.2
(1.2)
A 		175
B 103.7
(-3)
A 		264.1
(3)
A 		187.5
(0.1)
A 		151.1
(-1.2)
A 		150.8
(-1.2)
A 		143.2
(-1.5)
A 		160
C 63.1
(-3)
A 		297.8
(3)
A 		234.8
(1.4)
A 		199.9
(0.5)
A 		109.8
(-1.8)
A 		107.5
(-1.9)
A 		235
avr 75.3
(-3) 		249.9
(3) 		218.9
(1.9) 		171.6
(0.3) 		152.3
(-0.4) 		144.3
(-0.6) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 35.4
(-0.4)
A 		39
(-0)
A 		68.6
(3)
A 		9.8
(-3)
A 		59
B 19.7
(-1.1)
A 		58.1
(2.8)
A 		59.6
(3)
A 		1.7
(-3)
A 		58
C 18.7
(-2.7)
A 		55.7
(0.1)
A 		94.4
(3)
P 		15.1
(-3)
A 		79
avr 24.6
(-1.6) 		50.9
(0.9) 		74.2
(3) 		8.9
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 10.9
(-3)
A 		66.8
(3)
A 		51
(1.3)
A 		41.5
(0.3)
A 		59.2
(2.2)
A 		44.4
(0.6)
A 		56
B 36.1
(-3)
A 		87.9
(3)
A 		45.5
(-1.9)
A 		40
(-2.5)
A 		61.3
(-0.1)
A 		53.4
(-1)
A 		52
C 23.4
(-3)
A 		90.9
(3)
A 		59.8
(0.2)
A 		40.2
(-1.5)
A 		35.5
(-1.9)
A 		36
(-1.9)
A 		68
avr 23.5
(-3) 		81.9
(3) 		52.1
(-0.1) 		40.6
(-1.2) 		52
(-0.1) 		44.6
(-0.8) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11816
Sequence Type Exemplar sequence
Representative Public ID K06A4.4 NCBI
Target Description K06A4.4 /REP_DB=WormBase Gene ID /WP=CE06108 /TR=Q21254 /GB=CAA94783.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073048
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073048 NCBI Caenorhabditis elegans K06A4.4 (K06A4.4) mRNA, complete cds. None
K06A4.4 ENSEMBL cdna:known chromosome:CEL140:V:9503986:9507025:1 gene:K06A4.4 None
SNAP00000041747 ENSEMBL cdna:SNAP chromosome:CEL140:V:9505674:9507025:1 None
GENEFINDER00000041750 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9503986:9507025:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9503985-9506324(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A4.4
Entrez Gene 187047 Entrez gene
SwissProt Q21254 EMBL-EBI
WormBase CE32198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94783 Hypothetical protein K06A4.4 [Caenorhabditis elegans] ref|NP_505449.2| K06A4.4 [Caenorhabditis elegans] 1.0E-132
blast CAE72180 Hypothetical protein CBG19287 [Caenorhabditis briggsae] 1.0E-127
blast CAA94783 Hypothetical protein K06A4.4 [Caenorhabditis elegans] ref|NP_505449.2| K06A4.4 [Caenorhabditis elegans] 3.0E-92
blast CAE72180 Hypothetical protein CBG19287 [Caenorhabditis briggsae] 1.0E-88
blast CAE66183 Hypothetical protein CBG11421 [Caenorhabditis briggsae] 5.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 1.1E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505449.2 7 15-37,58-75,85-105,112-131,146-165,172-194,199-221
K06A4.4 7 15-37,58-75,85-105,112-131,146-165,172-194,199-221
SNAP00000041747 5 20-40,47-66,81-100,107-129,134-156
GENEFINDER00000041750 7 15-37,58-75,85-105,112-131,146-165,172-194,199-221
Sequence
Target Sequence 
>C. ELEGANS:179413_AT
taacctctacagctcttcatgcagttgctttaattactagtccagttcaagctgttcata
aatgggtacgaaggcaaagcagtgacagtgatactcccattccatacatttgtgcagtta
ttgggaaaattaagtatattctaaagaaaaaaaaaacaaaaaagttggacaagaatgtga
aatctaactctacagaaaaaaacagttttccaactcgtgctagtctcccacgaaagttaa
ttcgtctaatgactggaattgcagctgctctgtctttactcttcttgtacattggtaata
tgaatgatgaagacgggaaagaattcactggccgcatcgcatctggcgctcaaattgctg
ggtctctggtctgtccgtatctaatagtaagtactagttacccgtttagccgtcgggggt
atagctcaggggtagagcgctcgcttcgcatgcgagaagtctggggttcaattccccata
cctccaaatttcattttgcagtacaaagcagtaacatcgaaatgtatagattttgtaccc
ctggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCTCTACAGCTCTTCATGCAGT 232 639 92 Antisense
TACTCCCATTCCATACATTTGTGCA 434 645 183 Antisense
AACAGTTTTCCAACTCGTGCTAGTC 506 135 292 Antisense
GCTAGTCTCCCACGAAAGTTAATTC 226 289 310 Antisense
GAATTGCAGCTGCTCTGTCTTTACT 72 325 347 Antisense
ATCTGGCGCTCAAATTGCTGGGTCT 69 33 432 Antisense
CTCTGGTCTGTCCGTATCTAATAGT 363 231 455 Antisense
TAGCCGTCGGGGGTATAGCTCAGGG 329 647 498 Antisense
AGCGCTCGCTTCGCATGCGAGAAGT 708 81 527 Antisense
GTCTGGGGTTCAATTCCCCATACCT 33 471 550 Antisense
TGTATAGATTTTGTACCCCTGGCTC 280 555 614 Antisense
Sequence Source Affymetrix Proprietary Database