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[179412_at]

Description F49B2.3 /REP_DB=WormBase Gene ID /WP=CE16074 /TR=O45537 /GB=CAB04425.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 07      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 30.4
(3)
A 		8.5
(-2.6)
A 		6.8
(-3)
A 		9.8
(-2.2)
A 		24
B 11.5
(0.2)
A 		5.1
(-3)
A 		17.2
(3)
A 		15.9
(2.4)
A 		12
C 2.5
(-3)
A 		7.2
(-1.3)
A 		5.5
(-1.9)
A 		18.7
(3)
A 		16
avr 14.8
(3) 		6.9
(-3) 		9.8
(-0.8) 		14.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 34.6
(3)
A 		3.8
(-3)
A 		27
(1.5)
A 		4
(-3)
A 		5.9
(-2.6)
A 		3.8
(-3)
A 		31
B 18.7
(3)
A 		2.4
(-2.7)
A 		13.6
(1.2)
A 		1.6
(-3)
A 		3.3
(-2.4)
A 		6.9
(-1.1)
A 		17
C 1.8
(-3)
A 		22.2
(3)
A 		4.1
(-2.3)
A 		6.1
(-1.7)
A 		12.6
(0.2)
A 		3.8
(-2.4)
A 		20
avr 18.4
(3) 		9.5
(-0.7) 		14.9
(1.6) 		3.9
(-3) 		7.3
(-1.6) 		4.8
(-2.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.1
(3)
A 		1.8
(-2.8)
A 		1.8
(-2.8)
A 		1.4
(-3)
A 		10
B 3.7
(2.3)
A 		1.3
(-3)
A 		4
(3)
A 		3.4
(1.7)
A 		3
C 0.8
(-3)
A 		2.1
(0.3)
A 		1.9
(-0.3)
A 		3.2
(3)
A 		2
avr 5.2
(3) 		1.7
(-3) 		2.6
(-1.5) 		2.7
(-1.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.4
(3)
A 		1.3
(-2.6)
A 		5.9
(2.5)
A 		1
(-2.9)
A 		1.8
(-2)
A 		0.9
(-3)
A 		6
B 6.5
(3)
A 		0.8
(-2.6)
A 		3.3
(-0.1)
A 		0.4
(-3)
A 		1.3
(-2.1)
A 		2.6
(-0.8)
A 		6
C 0.7
(-3)
A 		6.8
(3)
A 		1
(-2.7)
A 		1.2
(-2.5)
A 		4.1
(0.3)
A 		1.3
(-2.4)
A 		6
avr 4.5
(3) 		3
(0.5) 		3.4
(1.2) 		0.9
(-3) 		2.4
(-0.5) 		1.6
(-1.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2381
Sequence Type Exemplar sequence
Representative Public ID F49B2.3 NCBI
Target Description F49B2.3 /REP_DB=WormBase Gene ID /WP=CE16074 /TR=O45537 /GB=CAB04425.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061099 NCBI Caenorhabditis elegans F49B2.3 (F49B2.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000010613 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14319127:14328015:1 11/11 None
F49B2.3 ENSEMBL cdna:known chromosome:CEL140:I:14319127:14320989:1 gene:F49B2.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010605 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14319057-14320920(+) 91.43 100.0
Public Domain and Genome References
Gene Title
Ensembl F49B2.3
Entrez Gene 186010 Entrez gene
SwissProt O45537 EMBL-EBI
WormBase CE16074 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04425 Hypothetical protein F49B2.3 [Caenorhabditis elegans] ref|NP_493500.1| F49B2.3 [Caenorhabditis elegans] 1.0E-150
blast CAB04425 Hypothetical protein F49B2.3 [Caenorhabditis elegans] ref|NP_493500.1| F49B2.3 [Caenorhabditis elegans] 1.0E-144
blast CAA16287 Hypothetical protein Y116A8B.1 [Caenorhabditis elegans] ref|NP_503053.1| Y116A8B.1 [Caenorhabditis elegans] 2.0E-36
blast CAA16287 Hypothetical protein Y116A8B.1 [Caenorhabditis elegans] ref|NP_503053.1| Y116A8B.1 [Caenorhabditis elegans] 5.0E-36
blast CAB04426 Hypothetical protein F49B2.4 [Caenorhabditis elegans] ref|NP_493501.1| F49B2.4 [Caenorhabditis elegans] 2.0E-28
blast AAC68915 Hypothetical protein W04B5.2 [Caenorhabditis elegans] ref|NP_497553.1| W04B5.2 [Caenorhabditis elegans] 2.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493500.1 1 288-305
F49B2.3 1 288-305
Sequence
Target Sequence 
>C. ELEGANS:179412_AT
cctttctcattagccacttcgaggacgtctacgagggattccggcaaccgcccccccccc
cctcgtgagcgatctggaactcagccagttcgacaagctgccggctatgaccagggccat
gagctgtcctgtgtgtctggttcgctacagcgactttggccaactgcagcagcacctgtt
ggaggacaaccctccacgccttcacgcgaattcaatggttcacacggccccccacgtgct
ccaggactgggtccggctagctgtcagaaagttaggccacggcagtctaacacacgtgat
tcggtttgggatggttcgaaaaaattgggttcgaggcacccgagatctttgaagtctcaa
agatttgagccatcacagccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTTCTCATTAGCCACTTCGAGGA 368 269 424 Antisense
TCAGCCAGTTCGACAAGCTGCCGGC 194 625 504 Antisense
CGGCTATGACCAGGGCCATGAGCTG 183 241 525 Antisense
CCATGAGCTGTCCTGTGTGTCTGGT 414 269 540 Antisense
GTGTGTCTGGTTCGCTACAGCGACT 54 489 554 Antisense
ACTGCAGCAGCACCTGTTGGAGGAC 309 95 586 Antisense
GCGAATTCAATGGTTCACACGGCCC 167 289 629 Antisense
GCTGTCAGAAAGTTAGGCCACGGCA 596 293 683 Antisense
GGCCACGGCAGTCTAACACACGTGA 430 543 698 Antisense
GAGGCACCCGAGATCTTTGAAGTCT 262 403 756 Antisense
AAAGATTTGAGCCATCACAGCCACC 204 123 782 Antisense
Sequence Source Affymetrix Proprietary Database