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[179411_at]

Description F43G9.2 /REP_DB=WormBase Gene ID /WP=CE10356 /TR=Q93715 /GB=CAB02105.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 91      6grp_total > 85      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 140.8
(2.1)
P 		102.2
(-3)
P 		142.8
(2.4)
P 		147.3
(3)
P 		45
B 164.2
(0.8)
P 		148.6
(-3)
P 		155.2
(-1.4)
P 		173
(3)
P 		24
C 170.7
(-2.6)
P 		190
(0)
P 		212
(3)
P 		167.5
(-3)
P 		45
avr 158.6
(0) 		146.9
(-3) 		170
(3) 		162.6
(1.1) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 108.2
(-3)
P 		235.2
(0.2)
P 		202.7
(-0.6)
P 		347.4
(3)
P 		295.7
(1.7)
P 		332.4
(2.6)
P 		239
B 107.1
(-3)
P 		166.6
(-1.5)
P 		142.3
(-2.1)
P 		251.4
(0.7)
P 		341.2
(3)
P 		304.2
(2.1)
P 		234
C 171.7
(-2.3)
P 		152.3
(-3)
P 		239.1
(0.1)
P 		270.3
(1.2)
P 		297.1
(2.2)
P 		320.4
(3)
P 		168
avr 129
(-3) 		184.7
(-1.2) 		194.7
(-0.9) 		289.7
(2.1) 		311.3
(2.8) 		319
(3) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 51.3
(3)
P 		22.2
(-2.9)
P 		37.3
(0.2)
P 		21.6
(-3)
P 		30
B 52.4
(3)
P 		36.7
(-2.7)
P 		36
(-3)
P 		36.9
(-2.7)
P 		16
C 56.5
(0.7)
P 		54.6
(0.5)
P 		73.9
(3)
P 		28.2
(-3)
P 		46
avr 53.4
(3) 		37.8
(-0.8) 		49.1
(1.9) 		28.9
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 19.9
(-3)
P 		83.6
(2.5)
P 		44.1
(-0.9)
P 		88.1
(2.9)
P 		89.2
(3)
P 		80.9
(2.3)
P 		69
B 37.3
(-2.8)
P 		55.5
(-1.8)
P 		34.6
(-3)
P 		66.6
(-1.2)
P 		138.6
(3)
P 		113.4
(1.5)
P 		104
C 63.6
(-1.3)
P 		46.5
(-3)
P 		60.8
(-1.6)
P 		54.4
(-2.2)
P 		96.1
(1.9)
P 		107.2
(3)
P 		61
avr 40.3
(-3) 		61.9
(-1.1) 		46.5
(-2.5) 		69.7
(-0.4) 		108
(3) 		100.5
(2.3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2085
Sequence Type Exemplar sequence
Representative Public ID F43G9.2 NCBI
Target Description F43G9.2 /REP_DB=WormBase Gene ID /WP=CE10356 /TR=Q93715 /GB=CAB02105.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059930 NCBI Caenorhabditis elegans F43G9.2 (F43G9.2) mRNA, complete cds. 11/11 None
SNAP00000043536 ENSEMBL cdna:SNAP chromosome:CEL140:I:8618056:8618901:1 11/11 None
GENEFINDER00000043557 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8618056:8618901:1 11/11 None
F43G9.2 ENSEMBL cdna:known chromosome:CEL140:I:8618146:8618901:1 gene:F43G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8618076-8618832(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43G9.2
Entrez Gene 185715 Entrez gene
SwissProt Q93715 EMBL-EBI
WormBase CE10356 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02105 Hypothetical protein F43G9.2 [Caenorhabditis elegans] ref|NP_492331.1| F43G9.2 [Caenorhabditis elegans] 2.0E-87
blast CAB02105 Hypothetical protein F43G9.2 [Caenorhabditis elegans] ref|NP_492331.1| F43G9.2 [Caenorhabditis elegans] 3.0E-87
blast CAE67092 Hypothetical protein CBG12503 [Caenorhabditis briggsae] 2.0E-84
blast CAE67092 Hypothetical protein CBG12503 [Caenorhabditis briggsae] 9.0E-75
blast CAG13095 unnamed protein product [Tetraodon nigroviridis] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.8E-10
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.8E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492331.1 1 140-162
F43G9.2 1 140-162
SNAP00000043536 1 170-192
GENEFINDER00000043557 1 170-192
Sequence
Target Sequence 
>C. ELEGANS:179411_AT
ggcgttaggcgtacaatcggctttaagccaagacgaagaagacgaaattcttattgatat
tgatgacagaactgcacttctgcgagaagatcgaggctcacgagatcccagtgtcgagga
tattttccataaaactgatactaacatagctcaagttcgagaagctcttccagaagaaag
tcacggtgtcactggttttcattttgtaaccgctcgagccccaacttcgtcatctatttc
tgtttggatggttgttttaggagttctcttgatcttctgtgtacttcctttggtgcttac
cttctacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGTTAGGCGTACAATCGGCTTTA 649 537 195 Antisense
GATGACAGAACTGCACTTCTGCGAG 298 411 256 Antisense
AGATCGAGGCTCACGAGATCCCAGT 138 67 282 Antisense
GATCCCAGTGTCGAGGATATTTTCC 485 417 298 Antisense
TCACGGTGTCACTGGTTTTCATTTT 508 623 375 Antisense
GTTTTCATTTTGTAACCGCTCGAGC 651 447 389 Antisense
CCCAACTTCGTCATCTATTTCTGTT 39 259 414 Antisense
GGATGGTTGTTTTAGGAGTTCTCTT 320 513 440 Antisense
GAGTTCTCTTGATCTTCTGTGTACT 33 399 455 Antisense
TTCTGTGTACTTCCTTTGGTGCTTA 229 695 469 Antisense
TCCTTTGGTGCTTACCTTCTACGAA 549 591 480 Antisense
Sequence Source Affymetrix Proprietary Database