[Home] | [Total List]

[179410_at]

Description F09C6.7 /REP_DB=WormBase Gene ID /WP=CE15766 /TR=O45326 /GB=CAB04066.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 11      6grp_cgc > 42      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 35.3
(-2.1)
A 		18.6
(-3)
A 		27.8
(-2.5)
A 		130.6
(3)
P 		112
B 25
(-3)
A 		41.3
(-1.2)
A 		35.3
(-1.9)
A 		79.1
(3)
P 		54
C 40.3
(-1.1)
A 		42.7
(-0.9)
A 		10.3
(-3)
A 		104.8
(3)
P 		95
avr 33.5
(-2.3) 		34.2
(-2.3) 		24.5
(-3) 		104.8
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 52.7
(3)
A 		23.9
(-0.5)
A 		11.9
(-2)
A 		6.5
(-2.7)
A 		3.9
(-3)
A 		4.7
(-2.9)
A 		49
B 6.4
(-3)
A 		7.1
(-2.6)
A 		18.1
(3)
A 		7.1
(-2.6)
A 		15.3
(1.6)
A 		6.8
(-2.8)
A 		12
C 8.5
(-2.4)
A 		40.4
(3)
A 		9
(-2.3)
A 		5
(-3)
A 		19.2
(-0.6)
A 		14.9
(-1.3)
A 		35
avr 22.5
(2.6) 		23.8
(3) 		13
(-0.7) 		6.2
(-3) 		12.8
(-0.8) 		8.8
(-2.1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.8
(0.5)
A 		4
(-3)
A 		7.3
(-1.7)
A 		19.1
(3)
P 		15
B 8
(-3)
A 		10.2
(-1.5)
A 		8.2
(-2.9)
A 		16.9
(3)
P 		9
C 13.3
(1.1)
A 		12.3
(0.7)
A 		3.6
(-3)
A 		17.7
(3)
P 		14
avr 11.4
(-0.4) 		8.8
(-1.7) 		6.4
(-3) 		17.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.7
(3)
A 		8.5
(2.2)
A 		2.6
(-2)
A 		1.6
(-2.7)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		9
B 2.2
(-2.6)
A 		2.4
(-2.3)
A 		4.4
(0.5)
A 		1.9
(-3)
A 		6.2
(3)
A 		2.5
(-2.2)
A 		4
C 3.2
(-1.8)
A 		12.3
(3)
A 		2.3
(-2.3)
A 		1
(-3)
A 		6.2
(-0.2)
A 		5
(-0.9)
A 		11
avr 5
(0.4) 		7.7
(3) 		3.1
(-1.5) 		1.5
(-3) 		4.5
(-0.1) 		2.9
(-1.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14654
Sequence Type Exemplar sequence
Representative Public ID F09C6.7 NCBI
Target Description F09C6.7 /REP_DB=WormBase Gene ID /WP=CE15766 /TR=O45326 /GB=CAB04066.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074870 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-68) (srd-68) mRNA, complete cds. 11/11 None
GENEFINDER00000006361 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16903794:16905429:-1 10/11 None
F09C6.7 ENSEMBL cdna:known chromosome:CEL140:V:16903794:16905405:-1 gene:F09C6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006350 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16903793-16905503(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-68
Ensembl F09C6.7
Entrez Gene 184234 Entrez gene
SwissProt O45326 EMBL-EBI
WormBase CE34535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04066 Hypothetical protein F09C6.7 [Caenorhabditis elegans] ref|NP_507271.2| Serpentine Receptor, class D (delta) family member (srd-68) [Caenorhabditis elegans] 0.0
blast CAB04066 Hypothetical protein F09C6.7 [Caenorhabditis elegans] ref|NP_507271.2| Serpentine Receptor, class D (delta) family member (srd-68) [Caenorhabditis elegans] 1.0E-176
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 1.0E-105
blast CAB04413 Hypothetical protein F48F5.4 [Caenorhabditis elegans] ref|NP_507935.2| Serpentine Receptor, class D (delta) family member (srd-70) [Caenorhabditis elegans] 1.0E-102
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 2.0E-96
blast CAB04413 Hypothetical protein F48F5.4 [Caenorhabditis elegans] ref|NP_507935.2| Serpentine Receptor, class D (delta) family member (srd-70) [Caenorhabditis elegans] 9.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507271.2 7 10-31,43-62,92-111,132-149,185-207,241-263,273-295
F09C6.7 7 10-31,43-62,92-111,132-149,185-207,241-263,273-295
GENEFINDER00000006361 5 20-42,101-123,174-196,230-252,262-284
Sequence
Target Sequence 
>C. ELEGANS:179410_AT
gaaggcgttattgcggaccaagctcttctcacttcactacctatttccactgctttttca
gactcaaacattcataccccgacaaaaccacgctcaagttcacaaggaaaccatgcagag
gcatcctcaagataattatgcaccctatttggactttggcgggtttagtgaagctcagaa
ggcttaccttgatgttagtacggtttttctggtgctgggatcggtttattgcccgttcgc
ggggctttactgtaagtaccaggctctgagtatgctgaaaccccacttgtcaccgaacac
ttcgagtgcaacgcgtgccatgcttcggactctgataaaaggcctcaactaccagatcct
tctgccactgctcagctatatccctaatacaagtctggtgatccttaatgctgttttaga
gaagcaagtgccaatctcccaatacactatagtctttggctcaatgtcgtgtgtcctcga
gccattcgttcagatctacttcatcactccctaccggcgagccatcgggcggctctgtaa
ctgctgcttccgaagggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCGTTATTGCGGACCAAGCTC 401 333 423 Antisense
TACCTATTTCCACTGCTTTTTCAGA 597 647 460 Antisense
TCAGACTCAAACATTCATACCCCGA 310 623 480 Antisense
ATGCACCCTATTTGGACTTTGGCGG 81 43 560 Antisense
TAGTACGGTTTTTCTGGTGCTGGGA 422 651 618 Antisense
GCTGGGATCGGTTTATTGCCCGTTC 433 285 636 Antisense
AGGCTCTGAGTATGCTGAAACCCCA 100 55 683 Antisense
GAACACTTCGAGTGCAACGCGTGCC 221 351 717 Antisense
TCTTTGGCTCAATGTCGTGTGTCCT 228 615 875 Antisense
TCGAGCCATTCGTTCAGATCTACTT 14 603 899 Antisense
TCTGTAACTGCTGCTTCCGAAGGGT 333 603 956 Antisense
Sequence Source Affymetrix Proprietary Database