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[179409_at]

Description T13H5.5 /REP_DB=WormBase Gene ID /WP=CE03656 /TR=Q22470 /GB=CAA91421.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 66      6grp_total > 60      4grp_total > 49      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1450
1 2 3 4 range
A 1405.5
(-3)
P 		2539.1
(3)
P 		2317.2
(1.8)
P 		1651.1
(-1.7)
P 		1134
B 1472.8
(-2.9)
P 		2328.7
(0.7)
P 		2855.6
(3)
P 		1452.7
(-3)
P 		1403
C 1554.9
(-3)
P 		2247.8
(2.7)
P 		2280
(3)
P 		1599.3
(-2.6)
P 		725
avr 1477.7
(-3) 		2371.9
(2.3) 		2484.3
(3) 		1567.7
(-2.5) 		1007

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1058
1 2 3 4 5 6 range
A 1582.6
(0.7)
P 		1291.2
(-2.2)
P 		1811.6
(3)
P 		1591
(0.8)
P 		1216.3
(-2.9)
P 		1207.2
(-3)
P 		604
B 1363.3
(-2.2)
P 		1650.3
(1.6)
P 		1757.6
(3)
P 		1625
(1.3)
P 		1522.2
(-0.1)
P 		1301.8
(-3)
P 		456
C 1124.5
(-2.6)
P 		1538.6
(-0.3)
P 		1335.5
(-1.4)
P 		2114.1
(3)
P 		1056.5
(-3)
P 		1531.7
(-0.3)
P 		1058
avr 1356.8
(-1.9) 		1493.4
(-0.3) 		1634.9
(1.3) 		1776.7
(3) 		1265
(-3) 		1346.9
(-2) 		512
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 511.7
(1.4)
P 		551.2
(2.1)
P 		605.8
(3)
P 		241.7
(-3)
P 		364
B 469.7
(-0.3)
P 		575.1
(1.5)
P 		661.7
(3)
P 		309.6
(-3)
P 		352
C 514.7
(-0.2)
P 		646.3
(1.3)
P 		794.7
(3)
P 		269.7
(-3)
P 		525
avr 498.7
(0.3) 		590.9
(1.6) 		687.4
(3) 		273.7
(-3) 		414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 291.7
(-3)
P 		459.2
(3)
P 		394.5
(0.7)
P 		403.5
(1)
P 		367
(-0.3)
P 		293.9
(-2.9)
P 		168
B 474.4
(-1.5)
P 		549.3
(0.8)
P 		426.8
(-3)
P 		430.4
(-2.9)
P 		618.5
(3)
P 		485.4
(-1.2)
P 		192
C 416.8
(-0.3)
P 		469.5
(1.5)
P 		339.9
(-3)
P 		425.1
(-0)
P 		341.9
(-2.9)
P 		512.7
(3)
P 		173
avr 394.3
(-2.6) 		492.7
(3) 		387.1
(-3) 		419.7
(-1.1) 		442.5
(0.1) 		430.7
(-0.5) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3236
Sequence Type Exemplar sequence
Representative Public ID T13H5.5 NCBI
Target Description T13H5.5 /REP_DB=WormBase Gene ID /WP=CE03656 /TR=Q22470 /GB=CAA91421.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063399 NCBI Caenorhabditis elegans T13H5.5 (T13H5.5) mRNA, complete cds. 11/11 None
SNAP00000035145 ENSEMBL cdna:SNAP chromosome:CEL140:II:8525611:8526610:1 11/11 None
GENEFINDER00000035151 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8525611:8526610:1 11/11 None
T13H5.5 ENSEMBL cdna:known chromosome:CEL140:II:8525611:8526610:1 gene:T13H5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8525607-8526607(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13H5.5
Entrez Gene 188488 Entrez gene
SwissProt Q22470 EMBL-EBI
WormBase CE03656 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91421 Hypothetical protein T13H5.5 [Caenorhabditis elegans] ref|NP_495800.1| T13H5.5 [Caenorhabditis elegans] 1.0E-145
blast CAE61009 Hypothetical protein CBG04747 [Caenorhabditis briggsae] 1.0E-139
blast EAA12276 ENSANGP00000011588 [Anopheles gambiae str. PEST] ref|XP_317419.2| ENSANGP00000011588 [Anopheles gambiae str. PEST] 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:179409_AT
gaagaggccggatacgcttacaatcatgttgaacgaaagaagggaatgtacaaaccacaa
cacagtattgccgagcagatttcctatatgaaaagtcgaggatacgcagaggcttacaaa
ggacttccgatttacagatggtataagagaaacatcaagggtcaatcgaaacttcaacca
cctccaagacttttctgcattgataaacacggccgattcaatctaaatcatgcttgtcca
gtgtgccgtgacgaatatctatacttcgactaccgaaacccaggtctcattgaacaattt
ttggcagatggcaccgaccaaccaatcgatatcctgaagagtggactatgtcgtgaacag
tacacgctacttcgtgcacaacttctgaaagcaaaagaacatggaacaatcacatttgga
gtagaattccgaaactttgattatcgtcaatggtacaaaagctggacagatgaacctgga
aagcctgttgagagagctggtgtacgtctgcaagatattcatccagatccacttgttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGGCCGGATACGCTTACAATC 580 337 106 Antisense
AAACCACAACACAGTATTGCCGAGC 410 125 157 Antisense
ATTGCCGAGCAGATTTCCTATATGA 346 7 172 Antisense
AAATCATGCTTGTCCAGTGTGCCGT 75 117 330 Antisense
GAATATCTATACTTCGACTACCGAA 463 325 358 Antisense
ACTACCGAAACCCAGGTCTCATTGA 616 99 374 Antisense
TTTGGCAGATGGCACCGACCAACCA 81 659 405 Antisense
GACCAACCAATCGATATCCTGAAGA 304 385 421 Antisense
GCTACTTCGTGCACAACTTCTGAAA 358 303 471 Antisense
GAGAGAGCTGGTGTACGTCTGCAAG 367 395 595 Antisense
TATTCATCCAGATCCACTTGTTCAC 565 661 621 Antisense
Sequence Source Affymetrix Proprietary Database