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[179408_at]

Description F02D8.1 /REP_DB=WormBase Gene ID /WP=CE09179 /TR=Q19118 /GB=CAB01644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 38
(-3)
A 		146.6
(3)
A 		94.7
(0.1)
A 		104.8
(0.7)
A 		109
B 20.4
(-2.6)
A 		111.5
(2.6)
A 		13.9
(-3)
A 		118.7
(3)
A 		105
C 115.4
(3)
P 		77.2
(0.8)
A 		12.1
(-3)
A 		115.7
(3)
A 		104
avr 57.9
(-1.5) 		111.8
(2.9) 		40.2
(-3) 		113.1
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 158.3
(3)
A 		94.5
(0.3)
A 		35.6
(-2.2)
A 		17.5
(-3)
A 		80.2
(-0.3)
A 		26.3
(-2.6)
A 		141
B 24.5
(-2.2)
A 		35.3
(-1.1)
A 		18
(-2.9)
A 		17.4
(-3)
A 		72.7
(3)
A 		36.4
(-0.9)
A 		55
C 92.9
(1.2)
A 		119.3
(3)
P 		93.7
(1.2)
A 		32.1
(-3)
A 		87.9
(0.8)
A 		105.8
(2.1)
A 		87
avr 91.9
(3) 		83
(2.2) 		49.1
(-0.7) 		22.3
(-3) 		80.3
(2) 		56.2
(-0.1) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 13.8
(-3)
A 		31.8
(3)
A 		24.8
(0.7)
A 		15.3
(-2.5)
A 		18
B 6.5
(-2.2)
A 		27.5
(3)
A 		3.2
(-3)
A 		25.3
(2.5)
A 		24
C 38.2
(3)
P 		22.2
(0.2)
A 		4.2
(-3)
A 		19.5
(-0.3)
A 		34
avr 19.5
(0.2) 		27.2
(3) 		10.7
(-3) 		20
(0.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 29.2
(2.1)
A 		33.6
(3)
A 		7.7
(-2.3)
A 		4.4
(-3)
A 		24.2
(1.1)
A 		6.4
(-2.6)
A 		29
B 8.5
(-2)
A 		11.7
(-1.3)
A 		4.4
(-3)
A 		4.6
(-3)
A 		29.6
(3)
A 		13.6
(-0.8)
A 		25
C 34.4
(2.6)
A 		36.4
(3)
P 		23.9
(0.5)
A 		6.5
(-3)
A 		28.5
(1.4)
A 		35.4
(2.8)
A 		30
avr 24
(2.1) 		27.2
(2.9) 		12
(-1.2) 		5.2
(-3) 		27.4
(3) 		18.5
(0.6) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179408_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13183
Sequence Type Exemplar sequence
Representative Public ID F02D8.1 NCBI
Target Description F02D8.1 /REP_DB=WormBase Gene ID /WP=CE09179 /TR=Q19118 /GB=CAB01644.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074280(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074280 NCBI Caenorhabditis elegans F02D8.1 (F02D8.1) mRNA, complete cds. 9/11 None
F02D8.1 ENSEMBL cdna:known chromosome:CEL140:V:14975494:14976546:-1 gene:F02D8.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004127 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14975493-14976546(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02D8.1
Entrez Gene 184078 Entrez gene
SwissProt Q19118 EMBL-EBI
WormBase CE36124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01644 Hypothetical protein F02D8.1 [Caenorhabditis elegans] ref|NP_506681.2| F02D8.1 [Caenorhabditis elegans] 2.0E-86
blast CAE66348 Hypothetical protein CBG11600 [Caenorhabditis briggsae] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:179408_AT
aaatccatttctgatgtgttctccagtactgaatgggaagaggacaaagaggatttgttg
ccaaaaaaggataatgactaccgaaaatccgcatttgaaaaatggaaaagctcattcaat
ttgaatcttctcgccaatgatcagcaatttggaagacgcacaagtcggggaaactcaaaa
tttttttcgagaccgccactcccaagtaatcctcgcccacgacgccaaagtctagctgca
acacttcgaagaacttctataaaagacgatttaaaggtattcataatttcacgctctaaa
aaaaaaaaatttcagaaaatttgggacacccgccgagtatcgttgtgcagtctaaaaact
caaatcaaggataaaatgactggaagatctcatgaaaatttggcaaaccgagcaactcat
tactgccaaaaaacttcttgtgatcagaatcaaaatgagaccgaggagagcttagacgat
agtagccctccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCCATTTCTGATGTGTTCTCCA 91 119 46 Antisense
ATGACTACCGAAAATCCGCATTTGA 701 43 119 Antisense
GAATCTTCTCGCCAATGATCAGCAA 76 329 168 Antisense
GAAGACGCACAAGTCGGGGAAACTC 655 339 197 Antisense
CCACGACGCCAAAGTCTAGCTGCAA 267 275 262 Antisense
GTCTAGCTGCAACACTTCGAAGAAC 674 469 275 Antisense
AGGTATTCATAATTTCACGCTCTAA 609 57 320 Antisense
CAGAAAATTTGGGACACCCGCCGAG 78 205 358 Antisense
GCCGAGTATCGTTGTGCAGTCTAAA 20 285 377 Antisense
AATTTGGCAAACCGAGCAACTCATT 203 175 442 Antisense
GCTTAGACGATAGTAGCCCTCCAGC 595 293 515 Antisense
Sequence Source Affymetrix Proprietary Database